File:Docking of P2 and L. lactis (macromolecule).png
Revision as of 05:33, 13 October 2020 by TalayKD (Talk | contribs) (Using Autodock Vina, we then docked this modelled macromolecule with the Phage P2’s PDB structure, which can be found in RCSB Protein Data Bank. The binding affinity given by Autodock Vina was -11.38 kcal/mol. From our experience, Autodock Vina’s b...)
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Docking_of_P2_and_L._lactis_(macromolecule).png (320 × 392 pixels, file size: 129 KB, MIME type: image/png)
Using Autodock Vina, we then docked this modelled macromolecule with the Phage P2’s PDB structure, which can be found in RCSB Protein Data Bank. The binding affinity given by Autodock Vina was -11.38 kcal/mol. From our experience, Autodock Vina’s binding affinity score varies +/- 1.0 kcal/mol. Also, please note that the lower the binding affinity core, or the most negative it is, the more likely the ligand will bind.
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| Date/Time | Thumbnail | Dimensions | User | Comment | |
|---|---|---|---|---|---|
| current | 05:33, 13 October 2020 | | 320 × 392 (129 KB) | TalayKD (Talk | contribs) | Using Autodock Vina, we then docked this modelled macromolecule with the Phage P2’s PDB structure, which can be found in RCSB Protein Data Bank. The binding affinity given by Autodock Vina was -11.38 kcal/mol. From our experience, Autodock Vina’s b... |
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