User contributions
- 08:44, 13 October 2020 (diff | hist) . . (+7) . . Part:BBa K3461001 (current)
- 08:37, 13 October 2020 (diff | hist) . . (+8) . . Part:BBa K3461001
- 08:36, 13 October 2020 (diff | hist) . . (+8) . . Part:BBa K3461001
- 08:36, 13 October 2020 (diff | hist) . . (+8) . . Part:BBa K3461001
- 08:34, 13 October 2020 (diff | hist) . . (+75) . . Part:BBa K3461001
- 08:29, 13 October 2020 (diff | hist) . . (+55) . . Part:BBa K3461001
- 08:23, 13 October 2020 (diff | hist) . . (0) . . Part:BBa K3461001
- 08:20, 13 October 2020 (diff | hist) . . (+5) . . Part:BBa K3461001
- 08:17, 13 October 2020 (diff | hist) . . (+9) . . Part:BBa K3461001
- 06:54, 13 October 2020 (diff | hist) . . (+24) . . Part:BBa K3461001
- 06:50, 13 October 2020 (diff | hist) . . (+205) . . Part:BBa K3461001
- 06:43, 13 October 2020 (diff | hist) . . (+167) . . N File:T--ICS BKK--Phage A25 docked with receptor on S. pyogenes.png (We decided to dock Phage A25, a bacteriophage that naturally binds to S. pyogenes, to S. pyogenes. The binding affinity calculated by Autodock Vina was -7.54 kcal/mol.) (current)
- 06:42, 13 October 2020 (diff | hist) . . (+120) . . N File:T--ICS BKK--Phage P2 Mutant 327 docked with receptor on L. lactis.png (This is the docking of Phage P2 Mutant #327 with receptor on L. lactis, which had a binding affinity of -10.01 kcal/mol.) (current)
- 06:40, 13 October 2020 (diff | hist) . . (+424) . . N File:T--ICS BKK--Docking of P2 and L. lactis (macromolecule).png (Using Autodock Vina, we then docked this modelled macromolecule with the Phage P2’s PDB structure, which can be found in RCSB Protein Data Bank. The binding affinity given by Autodock Vina was -11.38 kcal/mol. From our experience, Autodock Vina’s b...) (current)
- 06:38, 13 October 2020 (diff | hist) . . (+588) . . N File:T--ICS BKK--Phage receptor macromolecule on L. lactis.png (This Lactococcus Lactis carbohydrate receptor is the receptor for its natural phage P2. The Lactococcus Lactis bacteria plays a large role in dairy fermentations, although they are constantly attacked by bacteriophages. Thus, it becomes important to st...) (current)
- 06:36, 13 October 2020 (diff | hist) . . (+857) . . N File:T--ICS BKK--Mutated Phage P2 327 on Peptidoglycan.png (In an attempt to decrease the binding affinity value between Phage P2 and S. pyogenes, we used MODELLER to model 450 different versions of Phage P2. MODELLER is used to predict a protein’s three-dimensional structures when the program is provided wit...) (current)
- 06:34, 13 October 2020 (diff | hist) . . (+440) . . N File:T--ICS BKK--P2 on Peptidoglycan.png (This image shows the docking of Phage P2 on Peptidoglycan. We used Autodock Vina to dock the PDB format of Phage P2 with the receptor of S. pyogenes, which is peptidoglycan, in which its three-dimensional structure can be found on PubChem. We found the...) (current)
- 06:22, 13 October 2020 (diff | hist) . . (+3) . . Part:BBa K3461001
- 06:21, 13 October 2020 (diff | hist) . . (+49) . . Part:BBa K3461001
- 06:14, 13 October 2020 (diff | hist) . . (+179) . . Part:BBa K3461001
- 06:05, 13 October 2020 (diff | hist) . . (+2) . . Part:BBa K3461001
- 06:04, 13 October 2020 (diff | hist) . . (+1,190) . . Part:BBa K3461001
- 05:52, 13 October 2020 (diff | hist) . . (+167) . . N File:Phage A25 docked with receptor on S. pyogenes.png (We decided to dock Phage A25, a bacteriophage that naturally binds to S. pyogenes, to S. pyogenes. The binding affinity calculated by Autodock Vina was -7.54 kcal/mol.) (current)
- 05:43, 13 October 2020 (diff | hist) . . (+120) . . N File:Phage P2 Mutant 327 docked with receptor on L. lactis.png (This is the docking of Phage P2 Mutant #327 with receptor on L. lactis, which had a binding affinity of -10.01 kcal/mol.) (current)
- 05:40, 13 October 2020 (diff | hist) . . (+573) . . Part:BBa K3461001
- 05:33, 13 October 2020 (diff | hist) . . (+424) . . N File:Docking of P2 and L. lactis (macromolecule).png (Using Autodock Vina, we then docked this modelled macromolecule with the Phage P2’s PDB structure, which can be found in RCSB Protein Data Bank. The binding affinity given by Autodock Vina was -11.38 kcal/mol. From our experience, Autodock Vina’s b...) (current)
- 05:30, 13 October 2020 (diff | hist) . . (+588) . . N File:Phage receptor macromolecule on L. lactis.png (This Lactococcus Lactis carbohydrate receptor is the receptor for its natural phage P2. The Lactococcus Lactis bacteria plays a large role in dairy fermentations, although they are constantly attacked by bacteriophages. Thus, it becomes important to st...) (current)
- 05:19, 13 October 2020 (diff | hist) . . (+699) . . Part:BBa K3461001
- 05:15, 13 October 2020 (diff | hist) . . (+112) . . Part:BBa K3461001
- 05:12, 13 October 2020 (diff | hist) . . (+1,081) . . Part:BBa K3461001
- 05:08, 13 October 2020 (diff | hist) . . (+7) . . Part:BBa K3461001
- 05:07, 13 October 2020 (diff | hist) . . (+1) . . Part:BBa K3461001
- 05:06, 13 October 2020 (diff | hist) . . (-7) . . Part:BBa K3461001
- 05:05, 13 October 2020 (diff | hist) . . (+43) . . Part:BBa K3461001
- 05:03, 13 October 2020 (diff | hist) . . (+212) . . Part:BBa K3461001
- 04:56, 13 October 2020 (diff | hist) . . (+857) . . N File:Mutated Phage 327 on Peptidoglycan.png (In an attempt to decrease the binding affinity value between Phage P2 and S. pyogenes, we used MODELLER to model 450 different versions of Phage P2. MODELLER is used to predict a protein’s three-dimensional structures when the program is provided wit...) (current)
- 04:52, 13 October 2020 (diff | hist) . . (0) . . File:P2 on Peptidoglycan.png (TalayKD uploaded a new version of File:P2 on Peptidoglycan.png) (current)
- 04:45, 13 October 2020 (diff | hist) . . (+440) . . N File:P2 on Peptidoglycan.png (This image shows the docking of Phage P2 on Peptidoglycan. We used Autodock Vina to dock the PDB format of Phage P2 with the receptor of S. pyogenes, which is peptidoglycan, in which its three-dimensional structure can be found on PubChem. We found the...)
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