Coding

Part:BBa_K3317003:Design

Designed by: Erick Hernandez, Abigail Torres and Shakti Delgadillo   Group: iGEM19_UANL   (2019-10-15)
Revision as of 23:39, 21 October 2019 by Erick419 (Talk | contribs) (→‎Source)

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Catechol 1,2-dioxygenase (CatA) from Pseudomonas putida


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 283
    Illegal NgoMIV site found at 355
    Illegal AgeI site found at 55
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 967


Design Notes

sequence optimized to e. coli BL21, the ecoRI, XbaI, SpeI and PstI sites were avoided, a signal peptide () was added at its N terminal end with a flexible G4S linker


Source

From Pseudomonas putida mt-2 ACCESSION BAA07037

References

Wu, W., Dutta, T., Varman, A. M., Eudes, A., Manalansan, B., Loqué, D., & Singh, S. (2017). Lignin valorization: Two hybrid biochemical routes for the conversion of polymeric lignin into value-added chemicals. Scientific reports, 7(1), 8420.

Wagner, H. J., Capitain, C. C., Richter, K., Nessling, M., & Mampel, J. (2017). Engineering bacterial microcompartments with heterologous enzyme cargos. Engineering in Life Sciences, 17(1), 36-46.