Coding

Part:BBa_K2922024

Designed by: Yi Lin   Group: iGEM19_XMU-China   (2019-10-13)
Revision as of 17:47, 20 October 2019 by YuliaLee (Talk | contribs)

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Colicin-E1 coding region

Summary

As a kind of bacteriocin secreted by E.coli, colicin can kill other related bacteria that can’t secret specific immunity proteins. For Colicin-E1, it is a type of pore-forming colicin encoded by gene cea.This class of transmembrane toxins depolarize the cytoplasmic membrane, leading to dissipation of cellular energy.[1].(Fig.1)

Fig.1 Colicin-E1 can kill other bacteria.

Identification

When we were building this circuit, we did the nucleic acid gel electrophoresis experiment to verify. After the circuit was built, we sent the plasmid to sequence, and got the correct sequencing. After new molecular cloning experiments, we did Enzyme-Cut identification to certify the plasmid was correct. We used the XbaI and PstI to cut the plasmid, then we got the target separate fragment-1569bp. (Fig.2)

Fig.2 The result of this plasmid cut with enzyme XbaI and PstI.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 1312
    Illegal AgeI site found at 1369
    Illegal AgeI site found at 1501
  • 1000
    COMPATIBLE WITH RFC[1000]

Reference

  1. [1]https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1847374/
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