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BBa_K2640001 short
The BBa_K2640001 part is the coding sequence of Recombinant HCG Beta subunit Beta 3 loop epitope. The β3-loop of hCGβ66–80 ,also known as hCG Beta 3 Loop is an epitope present on the beta subunit of the hormone hCG. Human Chorionic Gonadotropin (hCG) is the hormone made by chorionic cells in the fetal part of the placenta where it stimulates the ovaries to synthesize important steroids for the maintenance of pregnancy. It is a member of the beta chain glycoprotein hormone family. The glycoproteins are heterodimers consisting of an alpha subunit and beta subunit. The beta subunit determines bio-specificity. There are numerous epitopes present on the beta subunit of hCG which are detected by hCG antibodies including those present in pregnancy test strips. According to the Journal of Biology Chemistry, “...The performance of a single site assay depends on the identity and nature of the chosen epitope, and it is crucial that it is present, intact and correctly folded in every hCG variant encountered. It is against this background that the β3-loop of hCGβ66–80 has been identified as a potentially ideal epitope…” (Gregor et al, 2011).
Optimized primers for hCG Beta 3 Loop
Name: Beta 3 Loop with biobrick prefix
Sequence: AAGGAGAATTCGCGGCCGCTTCTAGTCCATTCGTTTACCCGGATG
Annealing Temperature: 56℃
Name: Beta 3 Loop Biobrick Suffix
Sequence: AAGGCTGCAGCGGCCGCTACTAGTACACGACTGGGTTTACTCCG
Annealing Temperature: 64℃
Optimized primer for hCG Beta 3 Loop
Name:Beta 3 Loop primer for pGEX F
Sequence: ttcgcccaatttagaattcgAGTCCATTCGTTTACCCGGA v
Annealing Temperature: 68℃
Name: Beta 3 Loop primer for pGEX R
Sequence: AGCTCGACGTACGGTCGCGGCCGCACACGACTGGGTTTACTCCGCG
Annealing Temperature: 79℃
The hCG Beta 3 Loop coding sequence in pGEX was verified by sequencing
Expressing the Beta 3 Loop tagged with GST using IPTG for promotion
The Western Blot using anti-hCG (Figure 1.5) contains protein elutions of the Beta 3 Loop-GST fusion protein in lanes 3 and 4. Lane 13 shows the hCG protein standard. There was no detection by the hCG antibodies, however the Coomassie Blue stain shows the presence of poorly lysed cells. Lane 6 contains the cell debris from the protein isolation experiments and there is a very heavy band at the exact located the Beta 3 Loop and the GST fusion protein are expected to be, around 22-28 kDa. Our cell lysis step was not optimal, causing a large, aggregated protein mass in the cell debris (lane 6). The other samples present on the Coomassie Blue stain and the blot are of Part BBa_2524000, which was used to create this part.
Sequence and Features
BBa_K2640001 SequenceAndFeatures
https://static.igem.org/mediawiki/2018/c/c7/T--Georgia_State--Beta_3_Loop_protein_image.JPG
Optimized primers for hCG Beta 3 Loop
Name: Beta 3 Loop with biobrick prefix
Sequence: AAGGAGAATTCGCGGCCGCTTCTAGTCCATTCGTTTACCCGGATG
Annealing Temperature: 56℃
Name: Beta 3 Loop Biobrick Suffix
Sequence: AAGGCTGCAGCGGCCGCTACTAGTACACGACTGGGTTTACTCCG
Annealing Temperature: 64℃
Optimized primer for hCG Beta 3 Loop
Name:Beta 3 Loop primer for pGEX F
Sequence: ttcgcccaatttagaattcgAGTCCATTCGTTTACCCGGA v
Annealing Temperature: 68℃
Name: Beta 3 Loop primer for GEX R
Sequence: AGCTCGACGTACGGTCGCGGCCGCACACGACTGGGTTTACTCCGCG
Annealing Temperature: 79℃
Categories
//chassis/prokaryote/ecoli
