Coding

Part:BBa_K2587000

Designed by: Ylenia Longo   Group: iGEM18_Duesseldorf   (2018-09-15)
Revision as of 16:40, 17 October 2018 by NiSchmitt (Talk | contribs)


luxI_codon optimized S.cerevisiae

LuxI is an acyl homoserine lactone synthase, most known from the bacterium Alivibrio fischeri. LuxI is a basic component of the quorum sensing system of <nobr>A. fischeri</nobr>. In bacteria use it as a communication module among organisms to regulate expression of genes. In this part the synthase is codon optimized for the common yeast, <nobr>Saccharomyces cerevisiae</nobr>. Besides the codon optimization the construct contains also type II S cutting sites (BsaI), useful for example for Golden Gate cloning method. In yeast quorum sensing system is not frequently encountered and therefore a codon optimized form for utilization in an eukaryotic organism represents a beginning to design control systems in this type of organisms. For example, this LuxI is coupled with the design of a synthetic promoter, which is supposed to be activated by binding of the quorum sensing molecule together with the regulator (LuxR) to the promoter to induce expression of a reporter or a lysis gene to control cell population.


Usage and Biology

This part can be used as a component for designing synthetic circuits in S.cerevisiae. For instance in our project we used this gene to induce expression of a reporter after activation of a synthetic, self designed promoter.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NotI site found at 6
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 689
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 30
    Illegal BsaI.rc site found at 673


[edit]
Categories
Parameters
None