Composite

Part:BBa_K2762014

Designed by: PATRICK CHONG CHUN THENG   Group: iGEM18_NCKU_Tainan   (2018-09-29)
Revision as of 07:22, 17 October 2018 by Phixdvd (Talk | contribs) (→‎Characterization)


Pasr-B0034-sfGFP

Background

The asr promoter was first described by Suziedeliene et al. in 1999. They showed that asr is induced under low pH which is about pH 4.8, and it is controlled by the phoBR system. From the article they have published, the promoter is named as acid shock RNA (asr) promoter due to the RNA that has been transcribed after putting the E. coli into a low pH condition.

In 2007 Ogasawara et al2. found out that there is another regulatory system that controlling asr transcription by using SELEX to find the binding sequences of PhoQP-RstBA. Hence the asr promoter is directly controlled by two different systems, the phoBR system activated through low inorganic phosphate and the RstAB system sensing the pH while it is controlled by PhoQP-system activated by low Mg2+ concentrations.

Function of asr promoter in sfGFP reporting system

To expand the possible application of asr promoter, 2018 iGEM NCKU_Tainan put it together with sfGFP and tested this reporting system with more delicate pH gradings since a green fluorescent would be expressed once the promoter has been activated. In conclusion, we could monitor the pH in the surrounding medium in our device at any time by observing the color change of the medium.

Characterization

Colony PCR of finished construct

After finishing the Pasr biobrick construction, colony PCR is run to check the success of ligation. The length of the DNA is verified with agarose gel electrophoresis.

T--NCKU Tainan--part BBa K2762014.png

Charaterization of promoter with fluorescent intensity measurement

Pasr is reported to be induced in acidic condition. We think that it can be used to report the abnormal acidity of the medium. We thus determine to measure the fluorescent intensity in a short period of time. We first incubated the bacteria to log phase (within 2 hour) with LB medium. We then centrifuged the broth and suspended the pellet with pH modified M9 medium (the pH value is modified with 1M HCl). We then took the sample and incubate in the 96 well and measure its fluorescent intensity for every 3 minutes. We found out that the promoter Pasr will be induced at the pH value below four within 30 minutes. The different fluorescent intensity can be observed within 30 minutes. The fluorescent had the peak at pH value of 4.25.

T--NCKU Tainan--Results fig 21.png

Fig 2. The data shows the fluorescent intensity (absorbance: 485 nm, excitation: 535 nm) expressed by Pasr in different pH.

Based on the data has shown above, we could conclude that Pasr is an acidic promoter as it has a high expression of fluorescent at pH 4.25 and pH 5. The results show that Pasr constructed pH sensing system can be used as an alert. When the medium turns acidic, fluorescent can be easily observed. We believe that this system can also be applied to various bio-detection system.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 314
  • 1000
    COMPATIBLE WITH RFC[1000]


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