Translational_Unit

Part:BBa_K2213005

Designed by: Jessica Burns   Group: iGEM17_Manchester   (2017-08-17)
Revision as of 23:42, 1 November 2017 by Jengleback (Talk | contribs)


PduD(1-20)_mCherry_cgPPK2_His6

Figure 1: The overall architecture of the construct


PduD_mCh_PPK_architecture.png


The PduD(1-20) domain is sufficient to localise the part into a recombinant ethanolamine utilisation (Eut) or 1, 2 propanediol (Pdu) bacterial microcompartment (Jakobson et al., 2015). The mCherry allows monitoring the subcellular location of the part. The cgPPK2 domain encodes a soluble class II polyphosphate kinase from Corynebacterium glutamicim with a specific activity 30-fold greater than that of E. coli(Lindner et al., 2007;Kornberg and Simms, 1956). The part also contains a C-terminal hexa-histidine tag to allow purification with immobilised metal ion affinity chromatography.

The part was overexpressed in a BL21 (DE3) strain of E. coli under the control of a T7 promoter and purified to a certain degree (Figure 1) MCh_PPK_SDS_PAGE_gel_annotated.png

References
Jakobson, C., Kim, E., Slininger, M., Chien, A. and Tullman-Ercek, D. (2015). Localization of Proteins to the 1,2-Propanediol Utilization Microcompartment by Non-native Signal Sequences Is Mediated by a Common Hydrophobic Motif. Journal of Biological Chemistry, 290(40), pp.24519-24533.
Lindner, S., Vidaurre, D., Willbold, S., Schoberth, S. and Wendisch, V. (2007). NCgl2620 Encodes a Class II Polyphosphate Kinase in Corynebacterium glutamicum. Applied and Environmental Microbiology, 73(15), pp.5026-5033.

Kornberg, A., Kornberg, S. and Simms, E. (1956). Metaphosphate synthesis by an enzyme from Escherichia coli. Biochimica et Biophysica Acta, 20, pp.215-227.
Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 865
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 103
    Illegal SapI.rc site found at 1544


[edit]
Categories
Parameters
None