Coding

Part:BBa_K2273034

Designed by: Merle Brügmann   Group: iGEM17_TU_Dresden   (2017-09-21)
Revision as of 12:54, 22 October 2017 by Stassoulas (Talk | contribs)

Part Information
BioBrick Nr. BBa_K2273034
RFC standard RFC 25
Requirement pSB1C3
Original Biobrick Part BBa_J06504: mCherry
Submitted by [http://2017.igem.org/Team:TU_Dresden TU Dresden]

BBa_K2273034

Codon-optimized mCherry for Bacillus subtilis

Brief introduction in Fluorescent Proteins

 

Fluorescent proteins are small proteins with β-barrel-fold topology. They are useful for tracking global expression of target genes and localizations of these genes inside/outside cells. The unique chromophore in each fluorescent protein, originates from three intrinsic amino acids, at positions 65–67. The chromophore is tightly enclosed inside the protein and its formation does not require any cofactors or enzymes but only molecular oxygen. The rigidity of the β-barrel protects the chromophore from the environment and from radiationless decay. It also restricts chromophore flexibility as the correct folding of the protein is required for the chromophore formation. Proper orientation of the amino acids is necessary for chromophore maturation as it catalyzes chromophore synthesis.


Overview of mCherry

 

mCherry is a red fluorescent protein that has an excitation peak 585 nm and a peak emission at 615 nm. It originates from a protein isolated Discosoma sp., which a mushroom coral, and is very stable and resistant to photobleaching. It matures very quickly after transcription, making detection very quick.



mCherry expression in Bacillus subtilis





Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]
[edit]
Categories
Parameters
None