Translational_Unit

Part:BBa_K2013003

Designed by: Binglin Liu   Group: iGEM16_UESTC-China   (2016-10-12)
Revision as of 15:35, 19 October 2016 by Tedemin (Talk | contribs)


RBS and MHETase

This part contains the coding sequence of MHETase which can hydrolyzes MHET to TPA and EG. MHETase is second enzymes on the downstream of PETase in the bacterium Ideonella sakaiensis 201-F6 that Japanese scientists found.MHET is degraded into two kinds of natural environment harmless substances: terephthalic acid and ethylene glycol. In addition,we did codon optimization before synthesizing it to encode the target product successfully in E. coli.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 579
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 264
    Illegal NgoMIV site found at 378
    Illegal NgoMIV site found at 834
    Illegal AgeI site found at 331
    Illegal AgeI site found at 448
  • 1000
    COMPATIBLE WITH RFC[1000]


Experimental Validation

This part is validated through four ways: amplification, PCR, Enzyme cutting, SDS-PAGE and Sequence.

Amplification

Enzyme:Q5

Primer-F:5′- GAATTCGCGGCCGCTTCTAGAGTACTAGAGTCACACAAAAGGGTACTAGATG-3′

Primer-R:5′- CGCTACTAGTATTATTACGGCGGAGCCGCGCAC-3′

Results

T--UESTC-China--BBa_K2013003-Amplification.png


PCR

Enzyme:Taq

Primer-F:5′-CCACCTGACGTCTAAGAAAC-3′

Primer-R:5′-GTATTACCGCCTTTGAGTGA-3′

Results

T--UESTC-China--BBa_K2013003-PCR.png


Double digestion

After the assembly ,the plasmid was transferred into the Competent E. coli top10. After culturing overnight in LB,we minipreped the plasmid for double digestion .The first cutting procedure was performed with EcoRI and HindIII restriction endonuclease. The second cutting procedure was performed with PstI and BaHI restriction endonuclease.The plasmid was cutted in a 25μL system at 37 ℃ for 1 hours. The Electrophoresis was performed on a 1% Agarose glu.

Results

T--UESTC-China--BBa_K2013003-Double_digestion.png


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Parameters
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