Coding

Part:BBa_K1965021

Designed by: Katja Leben   Group: iGEM16_Slovenia   (2016-10-17)
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nLuc:AP4:TEVs:P3mS

Introduction

This part consisted of the N-terminus of the split firefly luciferase connected to AP4 coil, plus TEV protease substrate and P3mS and it goes in combination with P3:cLuc (BBa_K1965005). The P3mS coil dimerizes with AP4, thus prevents AP4 to dimerize with P3, onto which the C-terminus of the firefly luciferase was added. However, upon activation of TEVp, the linker between AP4 and P3mS, which features the TEVp cleavage site it is cleaved, which enables P3mS to dissociate from AP4. After the dissociation of P3mS, AP4 is free to dimerize with P3:cLuc, which bring the nLuc part into close proximity of cLuc, enabling the split luciferase to regain its catalytic activity (1). The P3mS sequence is based on P3 coil sequence, which featured substitutions of Ala at the b and c position of the coil heptades with Ser and Gln, to increase its solubility, thereby easing its dissociation from AP4.

Activation of nLuc:AP4:TEVs:P3mS in combination with P3:cLuc.
Upon addition of TEV protease the coil P3mS, which is now cleaved off from AP4, it is replaced by P3mS:cLuc, thereby promoting the reconstitution of firefly luciferase

Characterization

The construct was used in logic operations, whereby only in the presence of the protease the split luciferase was able to reconstitute and regain its activity (2).

P3mS-2A and P3mS were the best autoinhibitory coiled-coil constructs.
Normalized luciferase activity was compared between samples with and without added TEVp to calculate the fold change of luciferase activity. Out of the four different constructs, the constructs which contained the inhibitory coils P3mS and P3mS-2A worked best, where we observed up to 15 times fold increase with the addition of TEVp.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 103
    Illegal NgoMIV site found at 1447
    Illegal NgoMIV site found at 1468
    Illegal AgeI site found at 1171
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI site found at 1538
    Illegal SapI site found at 1694
    Illegal SapI.rc site found at 1353


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