Coding

Part:BBa_K2092004:Design

Designed by: Hui Wen Chong   Group: iGEM16_Manchester   (2016-10-02)
Revision as of 20:03, 2 October 2016 by Huiwenchong (Talk | contribs) (→‎Design Notes)


alcR (incl RBS), ethanol-activated transcription factor from A. nidulans


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 2568
    Illegal BamHI site found at 1572
    Illegal BamHI site found at 2310
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 1276
    Illegal AgeI site found at 1404
    Illegal AgeI site found at 1935
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

- Codon optimized the sequence retrieved from the NCBI database (original sequence is of eukaryotic origin).

- Calculated the RBS strength using the SalisLab RBS Calculator.

Source

Aspergillus nidulans, sequence found through <a href="https://www.ncbi.nlm.nih.gov/protein/40745154"> NCBI Database </a>

References