Part:BBa_K1590003

Chromate responsive promoter

This promoter is found upstream of the ChrBACF - operon in Ochrobactrum tritici 5bvl1, located in the transposable element TnOtChr of 7189bp length. Pchr is suspected to be inducible by chromate via the chromate-responsive repressor ChrB.

Sequence and Features

Assembly Compatibility:

• 10
  COMPATIBLE WITH RFC[10]
• 12
  COMPATIBLE WITH RFC[12]
• 21
  INCOMPATIBLE WITH RFC[21]

  Illegal BglII site found at 135
  
• 23
  COMPATIBLE WITH RFC[23]
• 25
  COMPATIBLE WITH RFC[25]
• 1000
  COMPATIBLE WITH RFC[1000]

Usage and Biology

Ochrobactrum tritici 5bvl1 was discovered in 2004 in a chromate contaminated wastewater treatment facility. A specific characteristic of this strain was that it could both, reduce Cr(VI) and be resistant to it at the same time. Previously characterised strains were either resistant or could reduce chromate. Over the last 10 years the group that discovered it started working out the underlying mechanisms of this set of characteristics.

The ChrBACF - operon, expressed from the Pchr - promoter led to the expression of the downstream genes chrA, chrB, chrC, and chrF. chrA was found to express and efflux pump, whereas the gene product of chrB was identified as being a chromate-inducible regulator of Pchr. Additionally, chrC and chrF were found to confer tolerance to superoxides, which can be byproducts of the reduction of Cr(VI).

Pchr itself is believed to be regulated by the chromate-sensitive repressor chrB. This has made it a candidate for a biological sensor of chromate contamination in e.g. rivers (Branco et al.), or in milk (iGEM BIT 2013). Our project focused on hijacking this circuit in order to build a detector for stainless steels.

In our reporter construct, Pchr was cloned upstream of gfp. The construct was fully sequence confirmed and confirmed in size.

Figure 1: Gel for size confirmation of pSB1C3-Pchr-gfp. pSB1C3-Pchr-gfp (3) was found to contain the expected sequence.