Translational_Unit

Part:BBa_K1465201:Design

Designed by: iGEM-Team Bielefeld 2014   Group: iGEM14_Bielefeld-CeBiTec   (2014-08-13)
Revision as of 22:41, 29 September 2014 by Tore (Talk | contribs) (→‎Design Notes)


Phosphoribulokinase prkA from Synechococcus elongatus


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 1009
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 198
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 657
    Illegal AgeI site found at 928
    Illegal AgeI site found at 999
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

  • Amplification of the pSB1C3-Backbone using specific the Gibson-Primer [http://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Primer#pSB1C3_pre_prkA pSB1C3_pre_prkA] and [http://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Primer#pSB1C3_suf_prkA pSB1C3_suf_prkA]:
pSB1C3_pre_prkA (43 bp)

5'-ACACGATCTGGCTTGCTCATCTCTAGAAGCGGCCGCGAATTCC-3'

pSB1C3_suf_prkA (43 bp)

5'-CGGTTGCCGCTAGCGTTTAATACTAGTAGCGGCCGCTGCAGTC-3'
  • [http://2014.igem.org/Team:Bielefeld-CeBiTec/Notebook/Protocols#Gibson Gibson-Assembly] of the pSB1C3-Backbone and the gBlock containing the optimized coding sequence of the Phosphoribulokinase (prkA) from Synechococcus elangatus.

Source

Gensynthesis ([http://eu.idtdna.com/pages/products/genes/gblocks-gene-fragments gBlocks]) of the codon optimized sequence for Escherchia coli by using the [http://www.jcat.de/ Codon Adaptation Tool] and the [http://eu.idtdna.com/CodonOpt Codon Optimization from IDT]:


BILD

References