T7

Part:BBa_K921001

Designed by: Eric Pederson   Group: iGEM12_Carnegie_Mellon   (2012-10-01)
Revision as of 02:45, 2 October 2012 by Enpederson (Talk | contribs)

T7 RNAP + IPTG->PoPs (Mutant II)
This is a mutant T7 promoter that includes a lacO sequence. This is repressible by the LacI protein and is induced in the presence of IPTG. The promoter sits in the 5' region of the gene of interest and initiates transcription when the cell expresses T7 RNA polymerase. Be sure you are using a cell strain that is compatible with T7 expression vectors.
The following parameters were calculated and compared against the "wild-type" [1] The following parameters were calculated:

Promoter BBa K921000 BBa K921001 BBa K921002
Transcription Strength 97% 72% 127%
Translational Efficiency 6% 6% 94%


Fluorogen activating proteins were used as protein reporters in our characterization experiment as described here. Here, a saturating amount of malachite green was added to each well of a 96 well plate and fluorescence values were recorded over time. Our model was used to describe the behavior of our time lapse data using differential equations and fitting algorithms.


The Spinach aptamer was used as an RNA reporter in our characterization experiment as described here. Here, a saturating amount of DFHBI was added to each well of a 96 well plate and fluorescence values were recorded over time. Our model was used to describe the behavior of our time lapse data using differential equations and fitting algorithms.

Note: Not included here are the properties of our characterization method. To learn more about how we characterized this set of promoters, click here.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Functional Parameters

directionForward
efficiency90%
negative_regulatorsLacI (Hypothesized LacIQ compatible)
[edit]
Categories
//chassis/bacteriophage/t7
//function/regulation/transcriptional
//plasmid/expression/t7
//promoter
//regulation/negative
Parameters
directionForward
efficiency90%
negative_regulatorsLacI (Hypothesized LacIQ compatible)