Reporter

Part:BBa_K782027

Designed by: Fedja Pavlovec   Group: iGEM12_Slovenia   (2012-09-20)
Revision as of 15:50, 26 September 2012 by Anja Golob (Talk | contribs)

7x[TALA] operator_minimal promoter_mCitrine

  • TALA labels represents TAL effector 1257 from zebrafish experiments (Sander et al., 2011).

Introduction

Transcription activation like (TAL) effectors are proteins able to specifically bind desired DNA sequence. The central domain of the protein is constructed from variable number of tandem repeats differing only in two amino acids. The 12th and the 13th amino acid are called a “repeat variable diresidue” (RVD) and are responsible for specific interactions with the corresponding base pair (Scholze and Boch, 2011). This modularity of TAL effector binding domains therefore makes them a perfect tool to target specific DNA sequences. Our construct contains seven specific binding sites for TALA upstream of minimal promoter. Downstream of minimal promoter we cloned yellow fluorescent protein mCitrine an easy detectable monomer with excitation maximum at 516 nm and emission maximum at 529 nm (Figure 1). After binding of TALA:VP16 on binding sites, an activation of reporter protein mCitrine occurs.

Single binding site sequence for TALA: TTTACTGCTGCTCCCGCT


Figure 1: Shematic representation of our construct.


  • mCitrine was provided from host lab.
  • Binding sites for TAL effectors were ordered from IDT.


References

Sander, J. D., Cade, L., Khayter, C., Reyon, D., Peterson, R. T., Joung, J. K., and Yeh, J.-R. J. (2011) Targeted gene disruption in somatic zebrafish cells using engineered TALENs. Nature Biotechnology 29, 697–698atic representation of construct. Scholze, H., and Boch, J. (2011) TAL effectors are remote controls for gene activation. Curr. Opin. Microbiol. 14, 47-53.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 481
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 189
    Illegal AgeI site found at 54
    Illegal AgeI site found at 389
  • 1000
    COMPATIBLE WITH RFC[1000]


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Parameters
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