Coding

Part:BBa_K733005:Design

Designed by: Chris Yu Lai Cheong; LI Yiming   Group: iGEM12_HKUST_Hong_Kong   (2012-09-16)
Revision as of 13:25, 24 September 2012 by Icunarta (Talk | contribs) (→‎References)

ybdN+Bmp2


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The mouse BMP-2 DNA sequence has an EcoRI cutting site and this site is within the codon of the DNA sequence. To standardize the biobrick, we try to do a point mutation on mouse BMP-2 after we amplify it from PCR. The purpose is to remove the EcoRI cutting site and remain the correct codon for protein translation of BMP-2.

Source

BMP-2 gene is obtained from mouse genomic DNA by PCR. Signal peptide YbdN gene is obtained from Bacillus subtilis genomic DNA by PCR. The recombinant protein YbdN+BMP-2 is obtained by overlapping PCR.

References

Beck, S. E., Jung, B. H., Fiorino, A., Gomez, J., Del Rosario, E., Cabrera, B. L., Huang, S. C., Chow, J. Y. C., & Carethers J.M. (2006). Bone morphogenetic protein signaling and growth suppression in colon cancer. The American Journal of Physiology-Gastrointestinal and Liver Physiology, 291(1), G135-G145.

Tjalsma, H., Bolhuis, A., Jongbloed, J. D. H., Bron, S., & Dijl, J. M. V. (2000). Signal peptide-dependent protein transport in bacillus subtilis: a genome-based survey of the secretome. Microbiology and Molecular Biology Reviews, 64(3), 515-547.