Coding

Part:BBa_K5322034

Designed by: Xinquan Zhou   Group: iGEM24_NJTech-China   (2024-09-30)
Revision as of 14:44, 30 September 2024 by Baiyun (Talk | contribs) (→‎Protein Structure Prediction)


Programmed Cell Death 1 Ligand 1 Functional Domain [Mus musculus]

Usage and Biology

Protein Structure Prediction

2.1 AlphaFold 2 Prediction Results

For the PD-L1 protein, we utilized AlphaFold 2 from Google DeepMind for protein structure prediction, aiming to gain a deeper understanding of PD-L1.

AlphaFold 2 Prediction Results:

AlphaFold 2 Prediction Results-model-1
AlphaFold 2 Prediction Results-model-2 AlphaFold 2 Prediction Results-model-1
AlphaFold 2 Prediction Results-model-3
AlphaFold 2 Prediction Results-model-4
AlphaFold 2 Prediction Results-model-5

Figure 2-1 AlphaFold 2 Prediction Results

2.2 AlphaFold 3 Prediction Results

With the release of AlphaFold 3, the accuracy of protein structure prediction has been further improved. Therefore, we conducted another round of protein structure prediction.

AlphaFold 3 Prediction Results:

AlphaFold 3 Prediction Results-model-1
AlphaFold 3 Prediction Results-model-2
AlphaFold 3 Prediction Results-model-3
AlphaFold 3 Prediction Results-model-4
AlphaFold 3 Prediction Results-model-5

Figure 2-2 AlphaFold 3 Prediction Results

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 316
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal PstI site found at 316
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 216
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 316
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 316
  • 1000
    COMPATIBLE WITH RFC[1000]
[edit]
Categories
Parameters
None