Part:BBa_K4886002

Pthl-F/Xpk(QS)

It is a part that is responsible for expressing F/Xpk from Bifidobacterium adolescentis ATCC 15703 with Pthl promotor. It consists of Pthl sequence (BBa_K3443002), strong ribosomal binding site (RBS) sequence (BBa_K103015), F/Xpk sequence (BBa_K4886000) and terminator sequence (BBa_K3585002). F/Xpk is a gene that encodes phosphoketolase. Phosphoketolase is an enzyme with both the Fpk and Xpk activity. It catalyzes the conversion of fructose-6-phosphate (F6P) to erythrose-4-phosphate (E4P) and acetyl-phosphate (AcP), and the conversion of xylulose-5-phosphate (X5P) to glyceraldehydes-3-phosphate (G3P) and AcP.

Sequence and Features

Assembly Compatibility:

• 10
  COMPATIBLE WITH RFC[10]
• 12
  COMPATIBLE WITH RFC[12]
• 21
  COMPATIBLE WITH RFC[21]
• 23
  COMPATIBLE WITH RFC[23]
• 25
  INCOMPATIBLE WITH RFC[25]

  Illegal AgeI site found at 808
  
• 1000
  COMPATIBLE WITH RFC[1000]

Results

（1）Plasmid construction

We used Pthl-adhE2 from BBa_K4408008 as the template and X-pMTL-F and X-pMTL-R as primers to obtain a X-Pthl vector (5461bp) by amplification. We used the Bifidobacterium adolescentis ATCC 15703 genome as a template to amplify the phosphoketolase gene [FXpk(QS)] fragment (2478bp). The vector and fragment were confirmed by gel electrophoresis (Figure 2 and 3). The FXpk(QS) fragment was ligated to the X-Pthl linear vector, using Gibson assembly. The plasmid was then transformed into E.coli JM109. After colony PCR for the transformed bacterial colonies, positive colonies were inoculated, and plasmids were extracted. The recombinant plasmid pMTL-Pthl-FXpk(QS) obtained was confirmed by gene sequencing.

Figure 2 Verification of F/Xpk(QS) (2478 bp) by DNA gel electrophoresis

Figure 3 Verification of X-pMTL-Pthl vector (5461bp) by DNA gel electrophoresis

（2 ）Transfection of C. tyrobutyricum and its growth

By using E. coli CA434 as a donor strain, pMTL-Pthl-F/Xpk(QS) plasmid and pMTL-Pthl-F/Xpk(BD) plasmid were transferred to C. tyrobutyricum, noted as Ct(F/Xpk-QS) and Ct(F/Xpk-BD), respectively. Refer to BBa_K4886001 for the construction of pMTL-Pthl-F/Xpk(BD). The native C. tyrobutyricum was the control. Fermentation experiment showed that the growth of Ct(F/Xpk-BD) is better than that of Ct(F/Xpk-QS) and that of the control (Figure 4).

Figure 4 Growth comparison of Ct(Pthl F/Xpk-BD) and Ct(Pthl F/Xpk-QS)

(3)Product yield of the transfected strain

Acetyl phosphate (AcP) is the final product of NOG pathway. AcP assay showed that the levels of AcP in Ct(Pthl F/Xpk-BD) and Ct(Pthl F/Xpk-QS) were both higher than the control, which was in accordance with the growth of the strains. This indicated that NOG pathway was open in the engineered strains, Figure 5.

Figure 4 Levels of acetyl phosphate in Ct(Pthl F/Xpk-BD) and Ct(Pthl F/Xpk-QS)

HPLC experiment showed that after fermentation for 26h, the yields of butyric acid were 3.35 g/L and 3.31 g/L in Ct(Pthl F/Xpk-BD) and Ct(Pthl F/Xpk-QS), both higher than the yield in the control. The yields of acetic acid were 1.36 g/L and 1.28 g/L in Ct(Pthl F/Xpk-BD) and Ct(Pthl F/Xpk-QS), both lower than that in the control. Glucose consumption was much higher in Ct(Pthl F/Xpk-BD) and Ct(Pthl F/Xpk-QS) compared with the control (Table 1). Ct(Pthl F/Xpk-BD) showed higher glucose consumption and butyric acid yield than Ct(Pthl F/Xpk-QS). Butyric acid is a 4-carbon molecule, while acetic acid is a 2-carbon molecule. The increase in the butyric acid production and glucose consumption and decrease in the by-product acetic acid yield suggested that Ct(Pthl F/Xpk-BD) and Ct(Pthl F/Xpk-QS) both have higher efficiency of using glucose and less carbon loss in glycosis compared with the native strain. In addition, Ct(Pthl F/Xpk-BD) was better in reducing carbon loss than Ct(Pthl F/Xpk-QS).

Table 1 Metabolite levels in Ct(Pthl F/Xpk-BD) and Ct(Pthl F/Xpk-QS) after 26h fermentation