Part:BBa_K4438601
T6_Trigger_1_midtrigger_phi29
T6_Trigger_1_phi29 is single-stranded DNA having 27 nucleotides. Figure 1B) Illustrates the secondary structure and its minimum free energy.
Usage and Biology
Few bases of this part are complementary (Watson-Crick base pairing) to T6 (BBa_K4438600) and are designed to block its sequence motif. Motif, mostly associated with the loops, is linked to the formation of the specific binding site for testosterone [1]. Figure 1D) Shows the secondary structure of both parts hybridised at 37° Celsius. The hormone binds with T6 (BBa_K4438600) with high affinity and displaces the T6_Trigger_1_phi29. This part has complete complementarity with the part T6_Binder_1(BBa_K4438602). Phi 29 DNA extension polymerase extends the template strand and in-vitro transcription of the duplex forms multiple broccoli light-up aptamers. Different levels of testosterone, an anabolic androgenic steroid (AAS), in biological fluids can be detected using all these three parts.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
References
Skouridou, V., Jauset-Rubio, M., Ballester, P., Bashammakh, A. S., El-Shahawi, M. S., Alyoubi, A. O., & O’Sullivan, C. K. (2017). Selection and characterization of DNA aptamers against the steroid testosterone. Microchimica Acta, 184(6), 1631-1639.
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