DNA

Part:BBa_K4438101

Designed by: Neha Adarsh   Group: iGEM22_IISER-Tirupati_India   (2022-10-11)
Revision as of 23:51, 11 October 2022 by Registry (Talk | contribs)

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FASTmiR-222-D2

FASTmiR stands for Fluorescence Aptamer Sensor For Tracking miRNAs. It is an RNA-based sensor for in-vitro quantification of miRNAs. FASTmiR-222-D2, after transcription, binds to miR-222, the transcription product of BBa_K4438500. The binding of these to RNAs will lead to the revelation of a binding site for DFHBI, a fluorophore, where it gets trapped and shows fluorescence.

Usage and Biology This part can be used for the detection of miR-222, which proves to be a biomarker for many diseases. The ON and OFF structure for the sensor was generated as given:


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal SpeI site found at 50
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal SpeI site found at 50
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal SpeI site found at 50
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal SpeI site found at 50
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
None