Part:BBa_K4377000:Design
Ubx
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NotI site found at 103
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 316
- 1000COMPATIBLE WITH RFC[1000]
Design Notes
According to Escherichia coli codon preference.
In order to purify our protein after expression, we added 10x His tag at the N terminal of Ubx protein. The reason we add 10x His tag at N terminal but not C terminal is to amplify the production of Ubx protein. To improve performance, we performed codon harmonization. The optimized sequence of codons will be more suitable for expression by our engineered E. coli
Cloning result
We successfully amplified His UBX plasmid in E.coli Dh5α and transformed into E.coli BL21 for expression.
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SDS-PAGE result
After expression, we conducted SDS PAGEs to verify whether the protein was produced.( result in Figure 3.)
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Test
As shown in the SDS PAGE result, the production was below expectation, also, we conducted functional tests, but there was no significant evidence that the protein is able to form dityrosine bonds.
Source
Drosophila melanogaster, sequence found through Uniprot https://www.uniprot.org/uniprotkb/P83949/entry