Composite

Part:BBa_K4165233

Designed by: Omnia AlaaEldeen Abdelazeem   Group: iGEM22_CU_Egypt   (2022-10-08)
Revision as of 10:48, 11 October 2022 by SalmaMohsen 2000 (Talk | contribs)


His - UBE2N

This biobrick consists of T7 promotor (BBa_K3633015), RBS (BBa_K4165016), His 6-His tag (BBa_K4165020), UBE2N (BBa_K4165011), T7 Terminator (BBa_K731721), The His tag was attached to the UBE2N coding sequence to serve in the purification using NI-NTA column.

Source

Synthesized

Usage and Biology

this part is a Ubiquitin-conjugating E2 ligase which has a role in the ubiquitination cascade for protein degradation. It has been used in this project to target and degrade both tau and Aβ proteins which are both considered the main causes of Alzheimer’s Disease pathogenesis.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 328
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

Dry lab

Mathematical modeling

Transcription rate and translation rate under T7 promotor

the mathematical modeling was based on our code for the calculation of transcription and translation (you can find it in the code section) beside with the estimated results from the wet lab.

                    Figure 1. this figure shows the results from the transcription and translation code showing the 
                            variation of mRNA and protein concentrations with time.

WetLab Results

Transformation of His UBE2N in BL-21 using pGS-21a vector

                                 Figure 2. Transformed plate of His UBE2N + pGS-21a

Transformation of His UBE2N in DH-5 alpha using pJET vector

                                Figure 2. Transformed plate of His UBE2N + pJET
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Categories
Parameters
None