DNA

Part:BBa_K3286230

Designed by: Niels Appelman   Group: iGEM19_Wageningen_UR   (2019-10-19)
Revision as of 16:09, 19 October 2019 by Niels Appelman (Talk | contribs)


LAMP detection site for Xylella fastidiosa (part of RimM gene)

This DNA sequence is recognized by the LAMP primers used most commonly for detection of Xylella fastidiosa, as published in the paper "Development of LAMP and real-time PCR methods for the rapid detection of Xylella fastidiosa for quarantine and field applications." by Harper et al. 2010. If one transforms it into a bacterium, this bacterium can be used as a model organism for the detection of X. fastidiosa by LAMP.

It consists of bases 72-444 of the RimM gene as published on: https://www.genome.jp/dbget-bin/www_bget?xfa:XF_0108

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


[edit]
Categories
Parameters
None