Composite

Part:BBa_K3287002

Designed by: Maria Ancin   Group: iGEM19_UPNAvarra_Spain   (2019-10-08)
Revision as of 09:16, 14 October 2019 by Sara Iglesias (Talk | contribs)


Cu_Blue

This composite part is a cooper biosensor. It is composed of the cueR activator under the control of a constitutive promoter, the cooper specific promoter copAP, a strong rbs, the amilCP blue chromoprotein and a transcription terminator. In presence of cooper, bacteria turn into different blue color intensities according to the concentration of cooper.

TITULO

Our biosensor for cooper detection is composed of a regulatory sequence made up by the CueR activator and the cooper specific promoter copAP. This promoter is regulated by CueR, which binds Cu2+ ions (Yamamoto and Ishihama 2005), that is under the control of a constitutive promoter (BBa_K608002). Then we used a blue chromoprotein (amilCP BBa_K592009) downstream the promoter for a first sight detection, with a strong RBS (BBa_B0030). The correct construction of this plasmid was confirmed by sequencing (Figure 1).

[[File:|600px|thumb|center|Figure 1. Figure 1. Construction of expression vector Cu_Blue (BBa_3287002) from parts of 2015_Bielefeld-CeBiTec: BBa_K1758320 and BBa_K1758323 (only the copAP promoter sequence); and amilCP coming from the chromoprotein collection of 2011_Uppsala-Sweden team. The CueR-copAP-amilCP composite part is cloned pSB1C3 vector through the BioBrick suffix-prefix site.]]


We transformed the plasmid containing BBa_K3287002 into E. coli competent cells and cultured at 37ºC until OD = 0.4. Then we add CuCl2 at different concentrations to induce the expression at 37 ℃ for 6 hours. After that, 2 mL of the bacterial culture were centrifuged at 3,000 r.p.m for 3 minutes, so we could observe at first sight the result of copAP promoter being activated by cooper (Figure 2).

Figure 4. Modeling a Nitrate biosensor. A) Input data; B) Regression model.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 475
    Illegal SapI.rc site found at 625


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