Coding

Part:BBa_K2560261

Designed by: Daniel Marchal   Group: iGEM18_Marburg   (2018-09-30)
Revision as of 14:17, 30 September 2018 by Marchal (Talk | contribs)


mcrC - C-terminal domain of Malonyl-CoA Reductase from Chloroflexus aurantiacus

This part contains the 3' part of the mcr gene for Malony-CoA Reductase from C. aurantiacus, encoding the C-terminal domain. This enzyme is involved in the 3-hydroxypropionate cycle for CO2 fixation and converts malonyl-CoA into 3-hydroxypropionic acid (Strauss & Fuchs, 1993). In a two-step reaction malonyl-CoA is first reduced to 3-oxopropanoic acid and then further reduced to 3-hydroxypropionic acid. The C-terminal domain catalyzes the first reaction step to 3-oxopropanoic acid and the N-terminal domain catalyzes the second reaction step to 3-hydroxypropionic acid.

BBa K2560260 Mcr pathway.png

It was shown that a splitted version of Mcr with separated C- and N-terminal domains increases enzyme activity (Liu et al., 2013). If these splitted genes shall be used take BBa_K2560262 and this part. If the gene for the whole enzyme shall be used take BBa_K2560260.

For this part, mcrC was codonoptimized for V. natriegens and then synthetisized and integrated into the vector BBa_K2560002 via BsmBI. According to Liu et al, we designed the part so that McrN contains amino acid 1-549 of the overall protein and McrC amino acid 550-1219 (Liu et al., 2013).


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 288
    Illegal NheI site found at 1690
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 361
    Illegal NgoMIV site found at 1975
    Illegal AgeI site found at 1524
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
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