Coding

Part:BBa_K2127001

Designed by: Nafaa Haddou   Group: iGEM16_IngenuityLab_Canada   (2016-10-14)
Revision as of 03:06, 26 October 2016 by Nhaddou (Talk | contribs)


Inducible High Expression His-Tagged Photosystem II CP47 subunit

Cyanobacteria is an not optimal system to manipulate the protein expression mainly due of the lack of strong promoters. Pcpc560 is a Cyanobacterial super promoter discovered by Dr. Ma’s team that contains two predicted promoter sites and a transcription binding site containing 14 homologous bacterial regions upstream of the regulated cpcB gene. Using Pcpc560, Dr. Ma’s team demonstrated that functional protein was produced at 15% of the total cell protein volume. Our team decided to test the effect of the transcription factor binding site on protein production in E.Coli cells DH5α. We believe that the predicted 14 homologous binding sites from Pcpc560 will allow us to increase the protein production greatly using the E.Coli DH5α. We constructed a biobrick containing the 14 transcription binding sites followed by a strong RBS (BBa_B0030) and a mutant HIS-Tag psbB gene. The super promoter can be an valuable asset to other iGEM teams for protein production and therefore we have decided to submit the Construct along with the Transcription Binding Site from Pcpc560.

We envision that this construct will be helpful in allowing teams to directly begin working with Photosystem components. Being sent as an expressible construct, teams will have the option of either using the construct directly for protein work, or isolating the genetic sequence and manipulating it to their needs.

A plasmid containing the composite part was successfully made and transformed into E. coli DH5aF'Iq. The plasmid was extracted using miniprep and double digested using EcoRI and Psti. The gel below confirms the transformation. Lane 1 contains the undigested plasmid running at approximately 1500 bp due to a supercoiled nature. An unexpected band at 3500 bp is seen and could be due to dimerization of the pSB1C3 vector. Support of this is due to the disappearance of the band once the sample is digested as seen in Lane 5. Lane 3 contains the gBlock from IDT and acts as a size control. The band is seen aa expected at 11995 bp. In lane 5, the digested plasmid is seen. Due to both the pSB1C3 vector and the BBa_K2127001 insert being very close to each other at 1995bp and 2070 bp, the resolution of the gel did not allow for a clear distinction of the bands. Compared to Lane 1 it can bee seen that digestion did occur since the run time changes significantly between the digested linear sample and the undigested supercoiled plasmid.

Team Ingenuity Lab Psbb Gel.png

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 658
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 782
    Illegal AgeI site found at 1379
    Illegal AgeI site found at 1583
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 1103
    Illegal SapI site found at 1780


[edit]
Categories
//binding/metal
//cds/enzyme
//cds/membrane
//chassis/prokaryote/cyanobacterium
//plasmid/expression
Parameters
chassisSynechocystis spp. PCC 6803
familyPhotosystem II Reaction Complex
functionLight Harvesting, Oxygen Reaction Complex Stabilization
insertExpressable
ligandsHistine, Fe(II), Chlorine, Mangenase, Calcium (II), Chlorophyll, Beta-Carotene
positive_regulatorsPcpc560 Transcription Factor Binding Site
protein47 kDa subunit
tagNickel Affinity Histine