DNA

Part:BBa_K2074126

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III-ACE8 satellite RAYSIII by Rumex acetosa

The DNA sequences deposited in the EMBL database under the accession number EU644727.


LOCUS EU644727 1113 bp DNA linear PLN 03-MAR-2009 DEFINITION Rumex acetosa clone III-ACE8 satellite RAYSIII sequence. ACCESSION EU644727 VERSION EU644727.1 GI:194396239 KEYWORDS . SOURCE Rumex acetosa (garden sorrel) 

ORGANISM  Rumex acetosa

          Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;

          Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;

          Pentapetalae; Caryophyllales; Polygonaceae; Polygonoideae;

          Rumiceae; Rumex.

REFERENCE 1 (bases 1 to 1113) 

AUTHORS   Mariotti,B., Manzano,S., Kejnovsky,E., Vyskot,B. and Jamilena,M.

TITLE     Accumulation of Y-specific satellite DNAs during the evolution of

          Rumex acetosa sex chromosomes

JOURNAL   Mol. Genet. Genomics 281 (3), 249-259 (2009)

 PUBMED   19085011

REFERENCE 2 (bases 1 to 1113) 

AUTHORS   Beatrice,M., Manzano,S. and Jamilena,M.

TITLE     Direct Submission

JOURNAL   Submitted (14-APR-2008) Applied Biology, University of Almeria,

          Carretera de Sacramento S/N, Almeria 04120, Spain

FEATURES Location/Qualifiers 

   source          1..1113

                   /organism="Rumex acetosa"

                   /mol_type="genomic DNA"

                   /db_xref="taxon:41241"

                   /clone="III-ACE8"

   repeat_region   1..1113

                   /rpt_type=tandem

                   /satellite="satellite:RAYSIII"

ORIGIN 

      1 aatcgatcaa aatggtcggt tcgaccctct aaggtccaaa tgggtcattt atcgacgttt

     61 tattcatggt agagccaata tgtacgtttt attttagaag atcgactccc aagtaaacta

    121 atattgatcg aaatggtaat gtgagcccta ttaggcacaa tttgatcata tagagacgtt

    181 ttattaatgt tcgacctaat atatacttat tattttacta aatcaactca caagtagaca

    241 aaaccaatta aaatggtcga tggggctcag agtgatcaaa taaggcccaa ttgcatcatt

    301 tatcgtaatt ttatcaaaat tcgagtaaat gtatacttca atgtcacttg atagaccaag

    361 ttcactaaac caataaaaat tgcttattag gccctatatg gaccaatatg gcccaattgc

    421 atcattcatc attgttttat tcaactttga gctaacaaat gtttgttatt tcaatagatc

    481 gactccaaaa gagactaaaa tcaaacaaat gagttgtttg gatcctataa tgcaaaattg

    541 gataaatttg tcgacgtttt attcacgttc aagataaaat atacttgtta ttttactaga

    601 tcaactccca tgtagaataa aatcgatcga aatgatctaa tgggcccaac gtgtcccaat

    661 acgacccaat tgcatcattt tatcatcatt ttatcgaaat tcaagtacat catgtatact

    721 taaatgtcac ttgatagact cccaagttga ctcaaccaat agaaattgca tattgggccc

    781 tatatggagt aatatggccc aatttcatca taaatcattg ttttattcaa cttcgagcta

    841 acaaatgttt gttatttcaa tatattgact ccaacgtaga ctaaaatcga aatggaacca

    901 taaagccaaa ttgcatcatg catcgatgtt ttattcaagt tcaagctaat atatgtttgt

    961 tatttcaata gatcaactac caactagact aaaatcgatc aaaatggtcc attgggccca

   1021 aaaatactca attgcatcat tcatcgaggc tttattcaac ttctagctaa taaatgtttg

   1081 ttatttcaat agatcaactc cttagtagac taa

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 520
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
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