Part:BBa_K1486008

CxpR & Split IFP1.4 [Cterm + Cterm][1]

Purpose of the Biobrick

This construct aimed to evaluate the activation and presumed dimerization of CpxR in E.Coli by fusing split IFP1.4 (Infrared Fluorescent Protein) - IFP[1] and IFP[2]. Upon dimerization, CpxR allows the two parts of the split protein to re-fold and acquire their ability to emit fluorescence. Not knowing how CpxR might dimerize, we built 4 different biobricks with the various possible orientations that the dimerization of CpxR might acquire.

An experiment on all possible CpxR - Split IFP fragments was launched to determine whether CpxR dimerized in E.Coli, as well as how this dimerization occured. The experiment conditions can be found here. The basics were the following: induction of stress by 50 mM KCl and reading on a plate reader with excitation and emission wavelengths of 640nm and 708 nm respectively.

The results of this experiment show that CpxR dimerizes, and that it does so via its C-terminal. Hence, the functional biobrick is CxpR & Split IFP1.4 [Cterm + Cterm] (BBa_K1486008).

Experiment 1: CpxR dimerization & Dimerization Orientation

CpxR is the relay protein in the CpxAR two component regulatory system. It has been shown that CpxR dimerizes when phosphorylated (activated) in yersinia pseudotuberculosis. We therefore hypothesised that this would also be true in E.Coli. To determine this, we built four constructs with the various possible orientations as seen under the associated Biobricks section bellow. As seen in the graph bellow, we successfully proved that CpxR dimerized, and that it did so via its C-terminus:

Associated Biobricks

In the context of the same experiment, we designed three more constructs with different CpxR - IFP fragment orientations. This construct was made in all orientations:

• CxpR & Split IFP1.4 [Nterm + Nterm] ( https://parts.igem.org/Part:BBa_K1486009 )
• CxpR & Split IFP1.4 [Nterm + Cterm] ( https://parts.igem.org/Part:BBa_K1486010 )
• CxpR & Split IFP1.4 [Cterm + Nterm] ( https://parts.igem.org/Part:BBa_K1486011 )

Sequence and Features

Assembly Compatibility:

• 10
  INCOMPATIBLE WITH RFC[10]

  Illegal PstI site found at 2213
  Illegal PstI site found at 3446
  
• 12
  INCOMPATIBLE WITH RFC[12]

  Illegal NheI site found at 1205
  Illegal PstI site found at 2213
  Illegal PstI site found at 3446
  
• 21
  INCOMPATIBLE WITH RFC[21]

  Illegal BglII site found at 3657
  Illegal BamHI site found at 1144
  Illegal XhoI site found at 1283
  Illegal XhoI site found at 2470
  
• 23
  INCOMPATIBLE WITH RFC[23]

  Illegal PstI site found at 2213
  Illegal PstI site found at 3446
  
• 25
  INCOMPATIBLE WITH RFC[25]

  Illegal PstI site found at 2213
  Illegal PstI site found at 3446
  Illegal AgeI site found at 979
  Illegal AgeI site found at 1694
  Illegal AgeI site found at 2881
  
• 1000
  INCOMPATIBLE WITH RFC[1000]

  Illegal SapI site found at 961