Part:BBa_K1033206:Design
Lactobacillus shuttle vector pSBLbC
- 10INCOMPATIBLE WITH RFC[10]Illegal prefix found in sequence at 3036
Illegal suffix found in sequence at 1 - 12INCOMPATIBLE WITH RFC[12]Illegal EcoRI site found at 3036
Illegal NheI site found at 1981
Illegal SpeI site found at 2
Illegal PstI site found at 16
Illegal NotI site found at 9
Illegal NotI site found at 3042 - 21INCOMPATIBLE WITH RFC[21]Illegal EcoRI site found at 3036
Illegal BamHI site found at 1960 - 23INCOMPATIBLE WITH RFC[23]Illegal prefix found in sequence at 3036
Illegal suffix found in sequence at 2 - 25INCOMPATIBLE WITH RFC[25]Illegal prefix found in sequence at 3036
Illegal XbaI site found at 3051
Illegal SpeI site found at 2
Illegal PstI site found at 16 - 1000COMPATIBLE WITH RFC[1000]
Design Notes
This is a shuttle vector complient with BioBrick standard 10 and 25 most prominetly. As such it has standard cloning sites, and no illegal restriction sites belonging to any of the most commonly used enzymes, with the possible exception of the less used NheI.
It has the pSH71 replicon commonly used in vectors for lactic acid bacteria (LAB), and can in theory replicate in E. coli and Lactobacillus, as well as many other LAB.[1]
Construction
The basic design is an iGEM backbone where we have changed the replicon and resistance cassette through subcloning and mutagenesis PCR.
The starting backbone was pSB4C15 made by Erik Lundin at Uppsala University by modifying pSB1C3. It is modular, meaning it was made with unique restriction sites around all key parts and we simply had to sublcone. We amplified the broad range replicon from pJP059 with the corresponding restriction sites (MluI and NheI), and did the same with the backbone to remove the old replicon, then cut and ligated them.
We kept the resistance gene, but had to change its promotor since we suspected it wouldn't work well in Lactobacillus, this we did with PCR amplicitation with the new promotor in the overhangs.
The insert is a standard RFP (BBa_J04450), but it may have to be replaced to use for screening in Lactobacillus.
The replicon and resistance cassette are surrounded by restriction sites selected by Erik Lundin for their usefullness, non-complementarity and not conflicting with BioBrick standards (excepting 12). The replicon uses MluI and NheI, and the resistance cassette uses SacI and SalI.
Source
- The backbone comes from pSB4C15.
- The replicon comes from the plasmid pJP059, originally from pSH71.
- The new promotor in the resistance cassette (CP29: BBa_K1033222) comes from the promotor library we synthesized to BioBrick standard based on the article "The Sequence of Spacers between the Consensus Sequences Modulates the Strength of Prokaryotic Promoters." by Peter Ruhdal Jensen and Karin Hammer, shown below.[2]