Coding

Part:BBa_K5115002

Designed by: Yi Shi   Group: iGEM24_Fudan   (2024-09-15)
Revision as of 09:03, 15 September 2024 by Shiyi2003 (Talk | contribs)


EP

contributed by Fudan iGEM 2023

Introduction

Hpn encodes a nickel-binding protein crucial for maintaining nickel homeostasis in Helicobacter pylori. With its high histidine content, Hpn plays a vital role in sequestering nickel ions, preventing toxicity while ensuring proper nickel transfer to urease. This process is essential for the activation of urease, an enzyme that enables H. pylori to colonize the acidic gastric environment.[1].

contributed by Fudan iGEM 2023
Figure 1. The biosynthetic pathway of shinorine, porphyra-334, palythine-Ser, and palythine-Thr

Usage and Biology

We performed codon optimization specifically for the Escherichia coli K12 strain, resulting in the creation of this part. The Hpn protein binds absorbed nickel ions, enhancing E. coli's tolerance to elevated nickel concentrations within E. coli.

Characterization

Nickel tolerance Assay

We.

contributed by Fudan iGEM 2023
Figure 2. Anti-UV Assay.

Our experiments demonstrated that expressing Hpn in E. coli significantly enhanced the bacterium's ability to absorb nickel ions. We hypothesize that this increased absorption is due to Hpn’s strong nickel-binding capacity. However, for optimal nickel uptake, other factors, such as the availability of additional nickel transporters or regulatory proteins, may also be necessary.

contributed by Fudan iGEM 2023
Figure 3. Plates displaying transformed E. coli after anti-UV assay.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 228
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


References

  1. Vinella, D., Fischer, F., Vorontsov, E., Gallaud, J., Malosse, C., Michel, V., Cavazza, C., Robbe-Saule, M., Richaud, P., Chamot-Rooke, J., Brochier-Armanet, C., & De Reuse, H. (2015). Evolution of Helicobacter: Acquisition by Gastric Species of Two Histidine-Rich Proteins Essential for Colonization. PLoS pathogens, 11(12), e1005312.
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