Part:BBa_K4729500
virG CDS (A. tumefaciens)
This part was PCR amplified from A. rhizogenes ARqua1 gDNA, internal BsmBI and BsaI cutting sites were removed for compatibility with the Marburg Collection Golden Gate standard (Stukenberg et al., 2021).
General explanation of virulence
The mechanism for virulence and plant transformation is mostly conserved between A. tumefaciens and A. rhizogenes, with high similarity in the sequences of the virulence genes and their regulation (Moriguchi et al., 2001; Zhu et al., 2000). Therefore, most of the knowledge already available for A. tumefaciens can be extrapolated when working with rhizogenes strains. In fact, the swapping of Ti-plasmids in tumefaciens strains with Ri-plasmids has created some of the most commonly used Agrobacterium rhizogenes strains, including one of the strains used by our team, Arqua1.
The Virulence Mechanism
Agrobacterium strains can transfer large DNA sequences to plant cells and integrate them into the plants' genome. Naturally, all the components for infection are present in a single, non-essential, 250 kbp plasmid (Ti-plasmid in A. tumefaciens or Ri-plasmid in A. rhizogenes).
The genes that code for the mechanism of plant infection and transformation are clustered in the vir (virulence) region, a ~30 kbp region of the Ri-plasmid. There are ca. 35 CDSs distributed in 11 operons in the vir region, which code for - among others - the type IV secretion system (vir B operon), proteins that excise and integrate the T-DNA in the hosts genome (C,D and E operons), and the two-component system that regulates the activation of the whole system (A and G operons). This two-component system can be understood as a “master switch” for the virulence genes.
Vir A is a trans-membrane sensor kinase that reacts to an acidic pH and phenolic compounds secreted by wounded plant tissue, causing it to phosphorylate the response regulator vir G. Among those phenolic compounds are acetosyringone, catechol and vanillin (Bolton et al., 1986). Once phosphorylated, vir G binds to the vir box region (TGAAAT) present in the promoters of virulence operons and upregulates their expression (Aoyama et al., 1989).
Bibliography
Aoyama, T., Takanami, M., & Oka, A. (1989). Signal structure for transcriptional activation in the upstream regions of virulence genes on the hairy-root-inducing plasmid A4. Nucleic Acids Research, 17(21), 8711–8725.
Bolton, G. W., Nester, E. W., & Gordon, M. P. (1986). Plant Phenolic Compounds Induce Expression of the Agrobacterium tumefaciens Loci Needed for Virulence. Science, 232(4753), 983–985. https://doi.org/10.1126/science.3085219
Chen, C.-Y., Wang, L., & Winans, S. C. (1991). Characterization of the supervirulent virG gene of the Agrobacterium tumefaciens plasmid pTiBo542. Molecular and General Genetics MGG, 230(1), 302–309. https://doi.org/10.1007/BF00290681
Jin, S., Song, Y., Pan, S. Q., & Nester, E. W. (1993). Characterization of a virG mutation that confers constitutive virulence gene expression in Agrobacterium. Molecular Microbiology, 7(4), 555–562. https://doi.org/10.1111/j.1365-2958.1993.tb01146.x
Moriguchi, K., Maeda, Y., Satou, M., Hardayani, N. S. N., Kataoka, M., Tanaka, N., & Yoshida, K. (2001). The complete nucleotide sequence of a plant root-inducing (Ri) plasmid indicates its chimeric structure and evolutionary relationship between tumor-inducing (Ti) and symbiotic (Sym) plasmids in rhizobiaceae11Edited by N.-H. Chua. Journal of Molecular Biology, 307(3), 771–784. https://doi.org/10.1006/jmbi.2001.4488
Zhu, J., Oger, P. M., Schrammeijer, B., Hooykaas, P. J. J., Farrand, S. K., & Winans, S. C. (2000). The Bases of Crown Gall Tumorigenesis. Journal of Bacteriology, 182(14), 3885–3895.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 332
Illegal BamHI site found at 624
Illegal XhoI site found at 271 - 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
| origin | A. rhizogenes |