DNA

Part:BBa_K4897000

Designed by: Ji Zhiyuan   Group: iGEM23_BS-United-China   (2023-10-03)
Revision as of 10:03, 8 October 2023 by AlanJi (Talk | contribs) (→‎What is it?)


BS DNA-50 (BS DNA 1.0) using in L-RCA for detecting P. acne

What is it?

BS DNA-50 was designed by BS United China as a single-stranded DNA segment complementary to the 131 base pairs of the 16S rRNA gene of P. acne. The composition of the DNA has three categories: binding region (two ends), amplification region, and random region. The binding region is the key element of binding the P. acne 16s rRNA gene [1]. The DNA ligase will perform the ligation of the single-strand DNA meanwhile the phi29 will generate double-stranded DNA through amplification primers

Usage and Biology

Fig. 1. The process of BS DNA binding to P. acne DNA.

Overall, theoretically, through ligation and rolling circle amplification (L-RCA), BS DNA-50 should have high selectivity for detecting the 16S rRNA gene of P. acne.


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal SpeI site found at 27
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal SpeI site found at 27
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal SpeI site found at 27
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal SpeI site found at 27
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
None