DNA

Part:BBa_K4800012

Designed by: Wenbin Zhao   Group: iGEM23_NJTech-China-B   (2023-10-06)
Revision as of 08:20, 6 October 2023 by FORSDA (Talk | contribs)


ackA-pta sgRNA

SgRNA, or small guide RNA, is an important component of the CRISPR knockdown system. The N20 sequence of the acka-pta SgRNA is derived from the acka and pta genes and can be localised to the acka-pta gene in the KA30 genome to assist the Cas9 protein in silencing the gene.


Document

Build:

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Fig1. ackA-pta sgRNA

1.1Construction of the expression vector The N20 sequence of the acka-pta gene was found on the CHOPCHOP website, designed on primers and the corresponding SgRNA was constructed by IPCR from the original SgRNA plasmid. 1.2knockout experiment We first transformed the SgRNA and Donor of aca-pta into the original strain of KA30 and, after verifying the success of the knockdown, we discarded the two plasmids, SgRNA and Cas9, through several rounds of delineation. Finally, we obtained the strain of KA30 with the knockdown of the aca-pta gene. 2 Characterization experiment knock-out strain fermentation test We made the knockout strain into competent cells, and then PRSFDuet-YciA-sfp-MmCAR-YahK and PTrc99a-davB-davA-GabT were transferred into KA30 competent cells knocked out of the acka-pta gene by electrotransfer. After verifying the success of plasmid transfer, they were plated into 5 mL of KA30 seed medium at 37°C and transferred into shake flasks after 20 h. Fermentation was carried out at 37°C and 200 rmp.

Test:

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Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


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