Protein_Domain
Fok_a

Part:BBa_K243000

Designed by: Freiburg Bioware09   Group: iGEM09_Freiburg_bioware   (2009-10-08)
Revision as of 13:12, 14 October 2009 by Timo (Talk | contribs)

Protein domain (active) of the restriction endonuclease FokI

This part is used as the active domain of our universal restriction endonuclease. It cut DNA, when it fused with the inactive protein domain of our universal restriction endonuclease(BBa_K243001)and linked with specific oligos.


Sequence specific nuclease(1968)

The researchers H.O. Smith, K.W. Wilcox, and T.J. Kelley (Johns Hopkins University 1968), were the first persons who isolated and characterized the first restriction nuclease whose functioning depended on a specific DNA nucleotide sequence. This was a big breakthrough for the genetic engineering, it gave the scientists a tool for working with the DNA. Now over forty years later over 3000 restriction enzymes have been studied in detail, and more than 600 of these are available commercially and are routinely used for DNA modification and manipulation in laboratories.


Usage and Biology

The usage of an universal endonuclease could change the daily routine of a scientist, who is working with DNA, because the question where to cut with which enzyme isn't needed anymore. He is free to chose the cutting sequence and can received the part that he wanted. The only thing is he had to plan where to cut and ordered specific oligos.


The idea

The idea is based of the modification of the existing restriction endonuclease FokI. Through modifications in the amino-acids sequence the DNA binding domain was diluted and one cleavage domain was inactivated

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 487


[edit]
Categories
//cds/enzyme/endonuclease/restriction
Parameters
None