Tag
Part:BBa_K4365007
Designed by: Svetlana Iarovenko Group: iGEM22_TU_Dresden (2022-09-29)
Revision as of 15:31, 11 October 2022 by Svetlana ia (Talk | contribs)
Signal peptide of RodA from Aspergillus nidulans
RodA is a protein found in Aspergillus nidulans and belongs to a family of highly secreted proteins called hydrophobins. The signal peptide from the protein led to higher turboRFP secretion efficiency in Saccharomyces cerevisiae than the α-mating factor pre-pro signal peptide K4365019.
ID | Source | Species | Prediction coefficient [1] | turboRFP secretion | |
---|---|---|---|---|---|
sp1 | BBa_K4365006 | MPGI | Magnaporthe grisea | 0.9562 | Yes |
sp2 | BBa_K4365007 | RodA | Aspergillus nidulans | 0.9553 | Yes |
sp3 | BBa_K4365008 | HYPI | Aspergillus fumigatus | 0.9703 | No |
sp4 | BBa_K4365009 | SsgA | Metarhizium anisopliae | 0.9126 | No |
sp5 | BBa_K4365010 | HCF-4 | Cladosporium fulvum | 0.9126 | Yes |
sp6 | BBa_K4365025 | HCF-5 | Cladosporium fulvum | 0.9234 | NA |
sp7 | BBa_K4365026 | CCG-2 | Neurospora crassa | 0.9566 | NA |
sp8 | BBa_K4365011 | HCF-1 | Cladosporium fulvum | 0.6850 | Yes |
sp9 | BBa_K4365027 | HCF-2 | Cladosporium fulvum | 0.8144 | NA |
sp10 | BBa_K4365012 | HCF-3 | Cladosporium fulvum | 0.7934 | No |
sp11 | BBa_K4365013 | SC3 | Schizophyllum commune | 0.6327 | No |
sp12 | BBa_K4365014 | ABH3 | Agaricus bisporus | 0.9458 | Yes |
sp13 | BBa_K4365028 | COH1 | Coprinus cinereus | 0.8545 | NA |
sp14 | BBa_K4365015 | FBH1 | Pleurotus ostreatus | 0.3367 | Yes |
sp15 | BBa_K4365016 | Aa-PRI2 | Agrocybe aegerita | 0.6356 | Yes |
sp16 | BBa_K4365033 | Hyd-Pt1 | Pisolithus tinctorius | 0.8352 | NA |
sp17 | BBa_K4365017 | HFBI | Trichoderma reesei | 0.9851 | Yes |
sp18 | BBa_K4365018 | HFBII | Trichoderma reesei | 0.6862 | Yes |
sp19 | BBa_K4365019 | α-mating factor | Saccharomyces cerevisiae | 0.9988 | Yes |
- ↑ José Juan Almagro Armenteros et al. (2019) SignalP 5.0 improves signal peptide predictions using deep neural networks Nature Biotechnology, 37, 420-423, doi: 10.1038/s41587-019-0036-z
Sequence and Features
Assembly Compatibility:
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
[edit]
Categories
Parameters
//proteindomain/localization
None |