Part:BBa_K4165157

MMDP6 Peptide

A synthetic peptide that is used for targeting misfolded tau protein (BBa_K4165009) as it binds to PHF6 of tau fibrils.

Usage and Biology

MMDP2 peptide sequence is HSDLWRRSFELM, it binds to ²⁷⁵-VQIINK-²⁸⁰ (PHF*) and ³⁰⁶-VQIVYK-³¹¹ (PHF) motifs of tau that are reported to drive tau paired helical filament aggregates, it inhibits formation of PHF* aggregates, but not PHF and full-length tau driven aggregates.

Sequence and Features

Assembly Compatibility:

• 10
  COMPATIBLE WITH RFC[10]
• 12
  COMPATIBLE WITH RFC[12]
• 21
  COMPATIBLE WITH RFC[21]
• 23
  COMPATIBLE WITH RFC[23]
• 25
  COMPATIBLE WITH RFC[25]
• 1000
  COMPATIBLE WITH RFC[1000]

Dry Lab

Modeling

MMDP6 is modeled by AlphaFold2 and Apptest, best model obtained from AlphaFold2

                            Figure 1.: Predicted 3D structure of Synthetic peptide MMDP6.

Table 1: Quality assessment parameters of MMDP6 model.

References

1. Malhis, M., Kaniyappan, S., Aillaud, I., Chandupatla, R. R., Ramirez, L. M., Zweckstetter, M., ... & Funke, S. A. (2021). Potent Tau Aggregation Inhibitor D‐Peptides Selected against Tau‐Repeat 2 Using Mirror Image Phage Display. ChemBioChem, 22(21), 3049-3059.