Coding

Part:BBa_K3071006

Designed by: Leung Hei Man   Group: iGEM19_Hong_Kong-CUHK   (2019-10-07)
Revision as of 04:26, 19 October 2019 by Heimanleung (Talk | contribs)


Phage shock protein F (PspF)

Descirption

This the protein-encoding gene for the Phage-shock protein pspF, which is originated from escherica coli K12 strain. The SDS-PAGE gel data and western blot data of our composite part (BBa_K3071020) shows it could be correctly expressed in E. coli in form of fusion protein. In our project, the original DNA-binding domain would be replaced by the Clp, leaving the transcription activation domain(TAD) in our biobrick design (BBa_K3071009).

Biology

T--Hong Kong-CUHK--pspF structure.png
Figure 1 Protein structure of PspF


PspF has a hexameric structure, with α/β and α domains in each monomer.(figure 1) It has ATPase activity in E. Coli to promote DNA strand separation, forming the open complex. Loop 1 (L1) and loop 2 (L2) are two loops locate in the α/β domains and α domains respectively. They are responsible for the interaction between PspF and the sigma 54. The 8 to 238 amino acids are the Sigma 54 interactive domain while the DNA strand binding motif is at the amino acid position 302 to 321.

Usage

PspF is a constitutively active enhancer-binding protein for activating the PspA promotor (BBa_K3071018) transcription in vivo. The enhancer is located in -80 to -126 upstream of the pspA transcription start site.

Characterization

T--Hong Kong-CUHK--Clp-pspF 12-28hr westernblot.png
Figure 2 Western blot analysis of pspF-Clp protein expression using Myc-Tag (9B11) Mouse mAb (1:2000)


Clone was induced by 1mM IPTG at 32℃ and collected at different time points, which are 12hr, 16hr, 20hr, 24hr, and 28hr. After blotting with corresponding antibodies, pspF-Clp was confirmed with successful expression at all time points. Results of blots probing pspF-Clp showed that clones collected at 12hr contained the highest amount of target proteins and the protein quantity decreased from 16hr to 28hr. This may due to degradation inside the cells.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 90
    Illegal AgeI site found at 118
    Illegal AgeI site found at 256
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
None