Plasmid

Part:BBa_K2564000

Designed by: Youngeun Choi   Group: iGEM18_KUAS_Korea   (2018-10-09)
Revision as of 20:06, 19 October 2019 by Jisheng Xie (Talk | contribs)


Beta-glucosidase (bgl1A)

The molecular function of beta-glucosidase (bgl1A) is Catalysis of the hydrolysis of terminal, non-reducing beta-D-glucose residues with release of beta-D-glucose.

Contribution

Group [http2019.igem.orgTeamXMU-China iGEM Team XMU-China 2019] Author Jisheng Xie, Zinuo Huang Summary Enzyme digestion and enzyme activity assay

(BBa_K1350001)

Biology

Bgl1A

Cellulose is a polymer composed of beta-1,4-linked glucosyl residues. Cellulases (Endoglucanases), cellobiosidases (Exoglucanases), and Beta-glucosidases are required by organisms (some fungi, bacteria) that can consume it. These enzymes are powerful tools for degradation of plant cell walls by pathogens and other organisms consuming plant biomass.

Beta-glucosidase is an enzyme that catalyzes the hydrolysis of the glycosidic bonds to terminal non-reducing residues in beta-D-glucosides and oligosaccharides, with release of glucose.[1]

Depending on the organism cellobiose may be cleaved extracellularly by β-glucosidases (cellobiases) and imported as glucose, or imported directly and cleaved in the cytoplasm. Import generally occurs through phosphotransferase transport systems.[2]


Characterization from iGEM19-XMU-China

Molecular weight

This gene codes for a protein of 461 amino acids with a molecular mass of 52,754 Da.


Enzyme digestion

We verified it by restriction digestion before using it.


Fig. 1 Agarose Gel Electrophoresis of T7-RBS-bgl1A (BBa_K2564000). (M: Marker)


HPLC Quantitative Experiment

We use HPLC to verify the activity of bgl1A. First of all, we used the different concentrations of glucose solution and cellobiose solution to make SWC (Standard Working Curve) of HPLC.


Fig. 2 SWC for T7-RBS-bgl1A, made through the relationship between peak area and concentration.


Then mix the crude enzyme solution with cellobiose, incubate under the condition of 37°C, 200 rpm using a shaking incubator for reaction. Take out one tube of reaction system into boiling water bath for 8 minutes to stop the reaction when and after interval time since reaction started. And then carry out HPLC on the sample.


Fig. 3 The results of HPLC. (A): T7-RBS-bgl1A supernatant; (B): T7-RBS-bgl1A broken supernatant

Result of the broken supernatant of medium cultures with PT7-RBS-bgl1A part shows that D-cellobiose got consumed with extension of reaction time and more D-glucose obtained, which means that Bgl1A can degrade D-cellobiose into D-glucose.

Supernatant of medium cultures with PT7-RBS-bgl1A part shows that D-cellobiose didn't get consumed with extension of reaction time and D-glucose didn't increase, which means that Bgl1A didn't secret out into the medium.


Reference

  1. ↑ M. Cox, D. Nelson, Lehninger Principles of Biochemistry. (2000), vol. 5. New York: Worth Publishers. pp. 306–308.
  2. ↑ R. M. Weiner et al., Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T. 4, e1000087 (2008).

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 1213
  • 1000
    COMPATIBLE WITH RFC[1000]


[edit]
Categories
Parameters
None