Part:BBa_K2460001

φBT1 integrase

This ORF codes for the steptomyces phage φBT1 integrase, which catalyzes a site specific recombination between φBT1 attBBBa_K2460002 and attPBBa_K2460003 sequences. This recombinase can be used to flip a DNA sequence flanked by attB and attP sites, as well as integrating a circular DNA with a attB/P site into a linear/circular DNA with a attP/B site.

Biological Characterisation

φBT1 integrase is a member of the large serine recombinases(LSRs) family. LSRs are recombinases encoded by temperate phage genomes, which precisely cut and recombine DNA in a highly controllable and predictable way. The recombinases recognize and bind to attB/P sites as dimers, and cut and recombinate on the attB/P sites, with two dimers forming a Tetramer. The recombinated attB/P sites form attL and attR sites. The recombination is irreversible without the corresponding phage excisionase, making the recombination stable and reliable.

Kinetic Characterisation

We conducted qPCR to record the ratio of attL/R to the sum of attL/R and attB/P, to characterize the effciency varying with time.

Genetie design

• The integrase is expressed under a PBad promoter BBa_I13453. Considering the leakage of PBad promoter would lead to flipping，the promoter is followed by a weaker RBS BBa_B0033. This construct was cloned on a medium copy plasmid with p15A replication of origin and kanamycin resistance.
• To ensure a low leakage when not induced, AraC is expressed under a constutive promoter, cloned on a high copy plasmid with pUC19 replication of origin and Ampicillin resistance.
• Transforming the two plasmid above at a time was unable to prevent the flipping. We transformed the former plasmid into competent cells with the latter plasmid.

Experimental Setup

Sequence and Features

Assembly Compatibility:

• 10
  COMPATIBLE WITH RFC[10]
• 12
  INCOMPATIBLE WITH RFC[12]

  Illegal NheI site found at 180
  
• 21
  COMPATIBLE WITH RFC[21]
• 23
  COMPATIBLE WITH RFC[23]
• 25
  INCOMPATIBLE WITH RFC[25]

  Illegal NgoMIV site found at 331
  Illegal AgeI site found at 1526
  
• 1000
  INCOMPATIBLE WITH RFC[1000]

  Illegal SapI.rc site found at 1489