Coding

Part:BBa_K1067004

Designed by: Kristian Davidsen and Helen Cook   Group: iGEM13_DTU-Denmark   (2013-09-23)
Revision as of 02:20, 28 October 2017 by Ew8sk (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Hydroxylamine oxidoreductase Hydroxylamine oxidoreductase (HAO) is the second enzyme in the conversion of ammonia to nitrite in Nitrosomonas europaea. It's substrate is hydroxyl amine (NH2OH) and it's producing nitrite (NO2-):

NH2OH + H2O + 2 cycAXox → NO2- + 2 cycAXred + 5 H+

In the brick there is also included a protein putatively involved in the nitrificationhttp://ecocyc.org/NEUR228410/NEW-IMAGE?type=LOCUS-POSITION&object=GJNO-2083&chromosome=CHROMOSOME-1 link to Biocyc.


Usage and Biology

HAO is an integral protein build up on a homotrimeric structure. It's the second step in the enzymatic conversion of ammonia to nitrite in the nitrifying bacteria genus. The protein works in close relationship with cycA, cycX and Ammonium monooxygenase (AMO) in this process. AMO is using 2 free electrons that are made from HAO and picked up by the cytochromes cycA and cycX. For every ammonium molecule 4 electrons are transfer; two of these are redirected to AMO while 2 is picked up and works as energy source for chemolithoautotrophic nitrifying bacteria like Nitrosomonas europaea.

This part is experienced to slow down growth rates of E.coli substantially.

Team Virginia 2017 Part Improvement: https://parts.igem.org/Part:BBa_K2272019


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 811
    Illegal PstI site found at 1552
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 811
    Illegal PstI site found at 1552
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 811
    Illegal BamHI site found at 246
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 811
    Illegal PstI site found at 1552
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 811
    Illegal PstI site found at 1552
    Illegal NgoMIV site found at 2348
    Illegal NgoMIV site found at 2382
    Illegal AgeI site found at 270
    Illegal AgeI site found at 1970
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 328
    Illegal BsaI.rc site found at 709


[edit]
Categories
//cds/biosynthesis
//function/biosynthesis
Parameters
protein