Coding

Part:BBa_K2485012:Design

Designed by: Michael Herschl   Group: iGEM17_Stanford-Brown   (2017-09-20)
Revision as of 04:56, 27 October 2017 by Mherschl (Talk | contribs) (→‎Design Notes)


Proteorhodopsin-cPT-RFP


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Unknown
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 1117
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Unknown
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

References

  1. Hou, Sing-Yi, et al. “Diversity of Chlamydomonas Channelrhodopsins.” Photochemistry and Photobiology, vol. 88, no. 1, 2011, pp. 119–128., doi:10.1111/j.1751-1097.2011.01027.x.
  2. Yamashita, Hayato, et al. “Role of trimer–trimer interaction of bacteriorhodopsin studied by optical spectroscopy and high-Speed atomic force microscopy.” Journal of Structural Biology, vol. 184, no. 1, 2013, pp. 2–11., doi:10.1016/j.jsb.2013.02.011.
  3. Bamann, Christian, et al. “Proteorhodopsin.” Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol. 1837, no. 5, 2014, pp. 614–625., doi:10.1016/j.bbabio.2013.09.010.
  4. Hussain, Sunyia, et al. “Functional Consequences of the Oligomeric Assembly of Proteorhodopsin.” Journal of Molecular Biology, vol. 427, no. 6, 2015, pp. 1278–1290., doi:10.1016/j.jmb.2015.01.004.
  5. “Part:BBa_K773002.” Part:BBa K773002, parts.igem.org/Part:BBa_K773002.
  6. Stone, Katherine M., et al. “Structural Insight into Proteorhodopsin Oligomers.” Biophysical Journal, vol. 104, no. 2, 2013, pp. 472–481., doi:10.1016/j.bpj.2012.11.3831.
  7. Doyle, Matthew Thomas, et al. “A small conserved motif supports polarity augmentation of Shigella flexneri IcsA.” Microbiology, vol. 161, no. 11, Jan. 2015, pp. 2087–2097., doi:10.1099/mic.0.000165.
  8. “ProteinPaintbox®.” ATUM, www.atum.bio/products/protein-paintbox#2.
  9. Sineshchekov, Oleg A., and John L. Spudich. “Light-Induced intramolecular charge movements in microbial rhodopsins in intact E. coli cells.” Photochemical & Photobiological Sciences, vol. 3, no. 6, 2004, p. 548., doi:10.1039/b316207a.