Part:BBa_K1789022

IAA(+/+)S2

This is a device which contains the sequence of the recombination of TALE1 and IAAM, the recombination of TALE2 and IAAH and scaffold 2. Through this device, we can test and verify that our scaffold can strengthen the function of IAA.

Usage and Biology

Indole-3-acetic acid (IAA), also known as auxin, is a plant hormone, which can promote growth and protect the soil from erosion. IAA can be synthesized through IAM pathway, originated from Pseudomonas savastanoi. Two important enzymes are contained in this pathway, AKA IaaM and IaaH.

In this device, the TALE1-fused IAAM and the TALE2-fused IAAH are incorporated in the E.coli due to the specific binding of TALE proteins and scaffold2, which could efficiently guide the enzymes around the DNA scaffolds, to enrich the local enzyme concentration, and promote the rate of reaction.

Sequence and Features

Sequence and Features

Assembly Compatibility:

• 10
  COMPATIBLE WITH RFC[10]
• 12
  COMPATIBLE WITH RFC[12]
• 21
  INCOMPATIBLE WITH RFC[21]

  Illegal BglII site found at 2724
  Illegal BamHI site found at 2311
  Illegal BamHI site found at 3669
  Illegal BamHI site found at 6072
  
• 23
  COMPATIBLE WITH RFC[23]
• 25
  INCOMPATIBLE WITH RFC[25]

  Illegal NgoMIV site found at 2431
  Illegal NgoMIV site found at 7088
  Illegal AgeI site found at 7576
  Illegal AgeI site found at 7606
  Illegal AgeI site found at 7636
  Illegal AgeI site found at 7666
  Illegal AgeI site found at 7696
  Illegal AgeI site found at 7726
  Illegal AgeI site found at 7756
  
• 1000
  INCOMPATIBLE WITH RFC[1000]

  Illegal BsaI.rc site found at 1304
  Illegal BsaI.rc site found at 5166
  Illegal BsaI.rc site found at 5370
  

Sequencing

This part is sequenced as correct after construction.

RT-PCR Analysis

To evaluate whether the expression variation of IAAM and IAAH can be promoted by the specific binding of TALE proteins and scaffolds, the RT-PCR analysis was conducted.(Fig. 1)

Fig. 1 RT-PCR analysis for determination of IAAM and IAAH expression in different TALE-IAA-scaffold groups. The cDNA sequence of 16S rRNA was amplified as standard.

To evaluate whether the rate of reaction can be promoted by the specific binding of TALE proteins and scaffolds, the sandwich ELISA analysis was conducted.

The TALE1-IAAM/TALE2-IAAH-Scaffold2 and TALE1-IAAM/TALE2-IAAH-Scaffold3 plasmids were transformed to E.coli BL21 (DE3), cultured and then IPTG induced overnight. The TALE1-IAAM/TALE2-IAAH transformed group was invoked as no scaffold control.

By sandwich ELISA analysis, both of the scaffold harboring groups showed significantly higher production of IAA than the no scaffold control group (>3.2 fold in TALE1-IAAM/TALE2-IAAH-Scaffold2 and >2.5 fold in TALE1-IAAM/TALE2-IAAH-Scaffold3, p<0.01, Fig.2).

Fig. 2 The production of IAA was determined by sandwich ELISA after overnight culture of E.coli with IPTG induction. After TMB coloring and reaction termination, the color was measured spectrophotometrically at a wavelength of 450 nm. The concentration of IAA in the samples is then determined by comparing their OD450 to the standard curves. The relative IAA concentration of TALE1-IAAM/TALE2-IAAH no scaffold control group was set arbitrarily at 1.0, and the levels of other groups were adjusted correspondingly. All of the data represent results obtained from at least three independent experiments. **p<0.01.