Reporter

Part:BBa_K1067001

Designed by: Kristian Davidsen   Group: iGEM13_DTU-Denmark   (2013-09-19)
Revision as of 10:10, 28 September 2013 by KrDa (Talk | contribs)

Twin-arginine translocation reporter

This biobrick is a part composed of GFP SF exported to the periplasm by twin-arginine translocation (TAT) signal peptide. In addition this is transcriptionally fused to a RFP with RBS associated.


Usage and Biology

The twin-arginine translocation is a pathway for secretion of proteins in prokaryotes but can also be found in plants and archaea. The TAT pathway unlike the Sec pathway in E.coli transport the proteins after folding. This can be practical when working with proteins that cannot fold properly in the periplasm because of the different redox state compared to the cytoplasm.

The TAT pathway can also be used to export fluorescence protein to the periplasm. Advantages when using TAT pathway instead of Sec to export fluorescence protein is that the fluorophore cannot form under the redox state in the periplasm. While the TAT pathway transport an already folded protein that have formed a fluorophore the Sec pathway transport an unfolded state of the protein and the fluorophore will have to form inside the periplasm.

The ration of expression between GFP SF and RFP can be tuned by switching out the RBS sequence upstream GFP SF.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 1225
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal PstI site found at 1225
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 1225
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 1225
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 149


Test in E.coli

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Functional Parameters

[edit]
Categories
//cds/membrane/transporter
//classic/reporter/pret
Parameters
signalling_molecule