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Regulatory

Part:BBa_K1045011

Designed by: iGEM Team Göttingen 2013   Group: iGEM13_Goettingen   (2013-09-20)
Revision as of 18:10, 12 October 2013 by Kati (Talk | contribs)

Promoter reverse
BBa_K1045011 encodes for a weak promoter based on BBa_J23117 promoter from the well characterized Anderson promoter collection. Yet, the promoter in BBa_K1045011 is inverted. We improved the inverted promoter BBa_J23117 by adding additional base pairs upstream of the inverted promoter region. These additional base pairs will allow cloning of this promoter directly in front of another promoter oriented in the opposite direction. This way, a vector with two different expression units oriented in diverging directions can be created. The extra bases prevent that the binding of the RNA polymerase to the usual promoter influences the binding of the RNA polymerase to the inverse promoter in BBa_K1045011. (for an example see BBa_K1045017, a screening system for compounds similar to c-di-AMP).

Why thispart is improved

1. BBa_J23117 is inverted (pre- and suffix switched). 2. BBa_K1045011 has additional bases in front of its promoter region to make it possible to clone it in front of a promoter oriented in the other direction. 3. Since the Sequence is just inverted between the pre- and suffix, this promoter can be used with other inverted biobricks.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 1
    Illegal NheI site found at 24
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 55
  • 1000
    COMPATIBLE WITH RFC[1000]


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Categories
Parameters
n/aPromoter reverse