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Part:BBa_K784017:Design

Designed by: Hila Korach Rechtman   Group: iGEM12_Technion   (2012-09-16)
Revision as of 16:02, 21 September 2012 by Hila K R (Talk | contribs) (→‎Design Notes)

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Phage Lambda fragment 3 - tail tip proteins


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 1365
    Illegal PstI site found at 1452
    Illegal PstI site found at 3152
    Illegal PstI site found at 3302
    Illegal PstI site found at 4461
    Illegal PstI site found at 6904
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal PstI site found at 1365
    Illegal PstI site found at 1452
    Illegal PstI site found at 3152
    Illegal PstI site found at 3302
    Illegal PstI site found at 4461
    Illegal PstI site found at 6904
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 1365
    Illegal PstI site found at 1452
    Illegal PstI site found at 3152
    Illegal PstI site found at 3302
    Illegal PstI site found at 4461
    Illegal PstI site found at 6904
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 1365
    Illegal PstI site found at 1452
    Illegal PstI site found at 3152
    Illegal PstI site found at 3302
    Illegal PstI site found at 4461
    Illegal PstI site found at 6904
    Illegal AgeI site found at 4046
    Illegal AgeI site found at 6183
    Illegal AgeI site found at 6362
    Illegal AgeI site found at 6694
    Illegal AgeI site found at 6765
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 357


Design Notes

This bio-brick is one of eight correlated bio-bricks – each one contains a one fragment of the phage lambda CI875s7. The phages fragments created in order to allow manipulation in the phage genome by manipulation smaller fragments, and re-factor the complete 48kb genome after the manipulation.
The main goal with the genome deviation to eight fragments was to avoid putting regulatory elements with their regulated sequences. By doing so, we can prevent the expression of harmful and lytic associated proteins to the host bacteria. Moreover, due to the phage lambda genome organization we could divide the phages genome while each part contains several proteins which are in functional correlation with each other.

Source

http://www.ncbi.nlm.nih.gov/nuccore/NC_001416.1

The physical DNA was obtained from NEB - http://www.neb.com/nebecomm/products/productn3011.asp


References