Difference between revisions of "Part:BBa K5115071"
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===Usage and Biology===
 
===Usage and Biology===
 
We delete the stop codon of this part to link it with [https://parts.igem.org/Part:BBa_K5115085 BBa_K5115085(F1v)].For more information about their experiment, please check  [https://parts.igem.org/Part:BBa_K5115086 BBa_K5115086(NixA-F1v)]and  [https://parts.igem.org/Part:BBa_K5115087 BBa_K5115087(F1v-NixA)].  
 
We delete the stop codon of this part to link it with [https://parts.igem.org/Part:BBa_K5115085 BBa_K5115085(F1v)].For more information about their experiment, please check  [https://parts.igem.org/Part:BBa_K5115086 BBa_K5115086(NixA-F1v)]and  [https://parts.igem.org/Part:BBa_K5115087 BBa_K5115087(F1v-NixA)].  
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===Characterization===
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{|
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| <html><img style="width:400px" src="https://static.igem.wiki/teams/5115/registry/nixa-alphafold.jpg" alt="contributed by Fudan iGEM 2024"></html>
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|-
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| '''Figure 1. The alphafold structure of NixA.<ref>Abramson, J., Adler, J., Dunger, J., Evans, R., Green, T., Pritzel, A., Ronneberger, O., Willmore, L., Ballard, A. J., Bambrick, J., Bodenstein, S. W., Evans, D. A., Hung, C.-C., O’Neill, M., Reiman, D., Tunyasuvunakool, K., Wu, Z., Žemgulytė, A., Arvaniti, E., … Jumper, J. M. (2024). Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature, 630(8016), 493–500. </ref>
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'''
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|}
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Revision as of 13:59, 29 September 2024


NixA, without stop codon

contributed by Fudan iGEM 2023

Introduction

NixA is a high-affinity nickel transporter in helicobacter pylori. It belongs to the NiCoT family of transporters and facilitates the import of Ni²⁺ ions across the bacterial cytoplasmic membrane. These nickel ions make up the active sites of urease and hydrogenase, enzymes crucial for H. pylori's ability to survive in the highly acidic environment of the stomach.[1]

Usage and Biology

We delete the stop codon of this part to link it with BBa_K5115085(F1v).For more information about their experiment, please check BBa_K5115086(NixA-F1v)and BBa_K5115087(F1v-NixA).

Characterization

contributed by Fudan iGEM 2024
Figure 1. The alphafold structure of NixA.[2]


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


References

  1. ↑ Fischer, F., Robbe-Saule, M., Turlin, E., Mancuso, F., Michel, V., Richaud, P., Veyrier, F. J., Reuse, H. D., & Vinella, D. (2016). Characterization in Helicobacter pylori of a Nickel Transporter Essential for Colonization That Was Acquired during Evolution by Gastric Helicobacter Species. PLOS Pathogens, 12(12), e1006018.
  2. ↑ Abramson, J., Adler, J., Dunger, J., Evans, R., Green, T., Pritzel, A., Ronneberger, O., Willmore, L., Ballard, A. J., Bambrick, J., Bodenstein, S. W., Evans, D. A., Hung, C.-C., O’Neill, M., Reiman, D., Tunyasuvunakool, K., Wu, Z., Žemgulytė, A., Arvaniti, E., … Jumper, J. M. (2024). Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature, 630(8016), 493–500.