Difference between revisions of "Part:BBa K4907106"

Latest revision as of 19:15, 10 October 2023

I0500-B0034-his tag-linker-tmafp-B0015

Part: BBa_K4907007 LMT-linker-tmafp

Biology

LMT

LMT is a signal peptide from the lytic murein transglycosylase of Vibrio natriegens which is used to secrete the protein to the periplasm.

TmAFP

TmAFP, found in Tenebrio molitor, is the one of antifreeze proteins (AFPs) (1). It is capable of preventing liquid freezing and inhibiting ice growth, which is defined as Thermal Hysteresis (TH) and ice recrystallization inhibition (IRI) respectively. Notably, TmAFP possesses the highest TH activity between all AFPs that have been found.

Usage and Biology

To test whether the LMT signal peptide can realize the secretion of TmAFP or not, this basic part BBa_K4907006 was constructed which codes the fused protein LMT-tmafp. If LMT performs a function, TmAFP can be detected in supernatant by sodium dodecyl sulfate (SDS)-12% (wt/vol) polyacrylamide gel electrophoresis (PAGE). Similarly, a linker was added between LMT and TmAFP to retain its function.

Characterization

Agarose gel electrophoresis (AGE)

BBa_I0500, BBa_B0034, BBa_K4907007 and <parinfo>BBa_B0015</partinfo> was assembled to obtain the composite part BBa_K4907106, which are inserted on the expression vector pSB1C3 by standard assembly. The constructed plasmids are transformed into E. coli BL21(DE3), then the positive transformants were selected by chloramphenicol and confirmed by colony PCR and sequencing.

Fig. 1 Colony PCR of BBa_K4907106_pSB1C3 in E. coli BL21(DE3)

Reference

U. S. Midya, S. Bandyopadhyay, Elucidating the Sluggish Water Dynamics at the Ice-Binding Surface of the Hyperactive Tenebrio molitor Antifreeze Protein. J. Phys. Chem. B 127, 121-132 (2023).

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
INCOMPATIBLE WITH RFC[12]
Illegal NheI site found at 1205
21
INCOMPATIBLE WITH RFC[21]
Illegal BamHI site found at 1144
23
COMPATIBLE WITH RFC[23]
25
INCOMPATIBLE WITH RFC[25]
Illegal AgeI site found at 979
Illegal AgeI site found at 1561
1000
INCOMPATIBLE WITH RFC[1000]
Illegal SapI site found at 961

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K4907106 short</partinfo>
+Part: BBa_K4907007
+LMT-linker-tmafp
-<!-- Add more about the biology of this part here
+===Biology===
+====LMT====
+LMT is a signal peptide from the lytic murein transglycosylase of <i>Vibrio natriegens</i> which is used to secrete the protein to the periplasm.
+===TmAFP===
+TmAFP, found in <i>Tenebrio molitor</i>, is the one of antifreeze proteins (AFPs) (1). It is capable of preventing liquid freezing and inhibiting ice growth, which is defined as Thermal Hysteresis (TH) and ice recrystallization inhibition (IRI) respectively. Notably, TmAFP possesses the highest TH activity between all AFPs that have been found.
 ===Usage and Biology===
+To test whether the LMT signal peptide can realize the secretion of TmAFP or not, this basic part <partinfo>BBa_K4907006</partinfo> was constructed which codes the fused protein LMT-tmafp. If LMT performs a function, TmAFP can be detected in supernatant by sodium dodecyl sulfate (SDS)-12% (wt/vol) polyacrylamide gel electrophoresis (PAGE). Similarly, a linker was added between LMT and TmAFP to retain its function.
+===Characterization===
+====Agarose gel electrophoresis (AGE)====
+<partinfo>BBa_I0500</partinfo>, <partinfo>BBa_B0034</partinfo>, <partinfo>BBa_K4907007</partinfo> and <parinfo>BBa_B0015</partinfo> was assembled to obtain the composite part <partinfo>BBa_K4907106</partinfo>, which are inserted on the expression vector pSB1C3 by standard assembly. The constructed plasmids are transformed into <i>E. coli</i> BL21(DE3), then the positive transformants were selected by chloramphenicol and confirmed by colony PCR and sequencing.
+<center><html><img src="https://static.igem.wiki/teams/4907/wiki/parts/yyn/k4907007-fig1.png" width="400px"></html></center>
+<center>Fig. 1 Colony PCR of BBa_K4907106_pSB1C3 in E. coli BL21(DE3)</center>
+===Reference===
+#U. S. Midya, S. Bandyopadhyay, Elucidating the Sluggish Water Dynamics at the Ice-Binding Surface of the Hyperactive <i>Tenebrio molitor</i> Antifreeze Protein. <i>J. Phys. Chem. B</i> <b>127</b>, 121-132 (2023).
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