Difference between revisions of "Part:BBa K4882005"
 
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===Usage and Biology===
 
===Usage and Biology===
  
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Metarhizium anisopliae is an entomopathogenic fungus widely used as a biopesticide. To improve the safety of M. anisopliae as a fungal biopesticide, we decided to introduce a suicide switch into the fungus. SuperNova ([https://parts.igem.org/Part:BBa_K4882008 BBa_K4882008]) is a red fluorescent protein that produces reactive oxygen species (ROS) in the presence of green-yellow light (~579 nm). The SV40 NLS ([https://parts.igem.org/Part:BBa_K2549054 BBa_K2549054]) should guide the protein to be transported into the cell nucleus, and let ROS attack the most vulnerable genomic DNA (Paardekooper et al., 2019). The SuperNova-SV40 NLS ([https://parts.igem.org/Part:BBa_K4882003 BBa_K4882003]) is linked downstream of a hemolymph inducible promoter Pmcl1 (short, [https://parts.igem.org/Part:BBa_K4882000 BBa_K4882000[). When the fungi invade the insect body, Pmcl1 turns on, and they cumulate SuperNova protein. When the fungi grow out of the insect body and try to spread spores, the tissues are under sunlight and killed by ROS. A trpC terminator was also included to form the complete expression cassette.  
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Metarhizium anisopliae is an entomopathogenic fungus widely used as a biopesticide. To improve the safety of M. anisopliae as a fungal biopesticide, we decided to introduce a suicide switch into the fungus. SuperNova ([https://parts.igem.org/Part:BBa_K4882008 BBa_K4882008]) is a red fluorescent protein that produces reactive oxygen species (ROS) in the presence of green-yellow light (~579 nm). The SV40 NLS ([https://parts.igem.org/Part:BBa_K2549054 BBa_K2549054]) should guide the protein to be transported into the cell nucleus, and let ROS attack the most vulnerable genomic DNA (Paardekooper et al., 2019). The SuperNova-SV40 NLS ([https://parts.igem.org/Part:BBa_K4882003 BBa_K4882003]) is linked downstream of a hemolymph inducible promoter Pmcl1 (short, [https://parts.igem.org/Part:BBa_K4882000 BBa_K4882000]). When the fungi invade the insect body, Pmcl1 turns on, and they cumulate SuperNova protein. When the fungi grow out of the insect body and try to spread spores, the tissues are under sunlight and killed by ROS. A trpC terminator was also included to form the complete expression cassette.  
  
 
===Characterization===
 
===Characterization===

Latest revision as of 14:41, 4 October 2023


Pmcl1 (short)-SuperNova-SV40 NLS-TtrpC

This is a complete suicide switch cassette consisting of a hemolymph inducible promoter Pmc1, a red fluorescent protein SuperNova fused with an SV40 nuclear localization signal (NLS), and a trpC terminator.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 489
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 2300
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 45
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 1737
    Illegal BsaI.rc site found at 2028



Usage and Biology

Metarhizium anisopliae is an entomopathogenic fungus widely used as a biopesticide. To improve the safety of M. anisopliae as a fungal biopesticide, we decided to introduce a suicide switch into the fungus. SuperNova (BBa_K4882008) is a red fluorescent protein that produces reactive oxygen species (ROS) in the presence of green-yellow light (~579 nm). The SV40 NLS (BBa_K2549054) should guide the protein to be transported into the cell nucleus, and let ROS attack the most vulnerable genomic DNA (Paardekooper et al., 2019). The SuperNova-SV40 NLS (BBa_K4882003) is linked downstream of a hemolymph inducible promoter Pmcl1 (short, BBa_K4882000). When the fungi invade the insect body, Pmcl1 turns on, and they cumulate SuperNova protein. When the fungi grow out of the insect body and try to spread spores, the tissues are under sunlight and killed by ROS. A trpC terminator was also included to form the complete expression cassette.

Characterization

2023 Hangzhou-SDG Team characterized this part as a suicide switch We tested the suicide switches based on the amounts of spore formation and the spore germination rates. Engineered strains were inoculated to the larvae of the greater wax moth (Galleria mellonella). The Petri dishes containing the pest corpses were placed under sunshine for days until spores formed outside the insect body. Spores were collected by vertexing and the concentrations of spore suspensions were checked under a microscope.

Figure 1. A. The amount of spore formation by each strain on G. mellonella corpses; B. The spore germination rate of each strain in liquid PDB media after 10h. *: p < 0.01; **: p < 0.001.

The results showed that the strain containing Pmcl1 (short)-SuperNova-SV40 NLS-trpC terminator performed the best and formed significantly fewer spores than the WT strain (p < 0.001).

After being collected, the spores from each strain were resuspended in liquid PDB media at the concentration of 5 × 10^5 spores/mL. The suspensions were incubated at 30 °C, 180 rpm for 10h to facilitate spore germination.

The germination rate results indicated that Pmcl1 (short)-SuperNova-SV40 NLS-trpC terminator could not influence spore viability after spore formation.

References

Paardekooper LM, van Vroonhoven E, Ter Beest M, van den Bogaart G. Radical Stress Is More Cytotoxic in the Nucleus than in Other Organelles. Int J Mol Sci. 2019 Aug 25;20(17):4147. doi: 10.3390/ijms20174147. PMID: 31450682; PMCID: PMC6747261.