Difference between revisions of "Part:BBa K4882008"

(→‎Characterization)
Line 3: Line 3:
 
<partinfo>BBa_K4882008 short</partinfo>
 
<partinfo>BBa_K4882008 short</partinfo>
  
−
SuperNova is a red fluorescent protein that produces reactive oxygen species (ROS) in the presence of green-yellow light (~579 nm) (Takemoto et al., 2013). Supernova is the monomeric version of KillerRed (BBa_K1184000) and should produce three times as much ROS as KillerRed can (Onukwufor et al., 2019).  
+
SuperNova is a red fluorescent protein that produces reactive oxygen species (ROS) in the presence of green-yellow light (~579 nm) (Takemoto et al., 2013). Supernova is the monomeric version of KillerRed ([https://parts.igem.org/Part:BBa_K1184000 BBa_K1184000]) and should produce three times as much ROS as KillerRed can (Onukwufor et al., 2019).  
  
 
<html>
 
<html>
Line 29: Line 29:
 
===Usage and Biology===
 
===Usage and Biology===
  
−
Metarhizium anisopliae is an entomopathogenic fungus widely used as a biopesticide. To improve its safety, SuperNova is used as a part of a suicide switch for the engineered M. anisopliae. SuperNova is linked downstream of a hemolymph inducible promoter Pmcl1 (short version, BBa_K4882000). When the fungi invade the insect body, Pmcl1(short) turns on, and they cumulate SuperNova protein. When the fungi grow out of the insect body and try to spread spores, the tissues are under sunlight and killed by ROS.  
+
Metarhizium anisopliae is an entomopathogenic fungus widely used as a biopesticide. To improve its safety, SuperNova is used as a part of a suicide switch for the engineered M. anisopliae. SuperNova is linked downstream of a hemolymph inducible promoter Pmcl1 (short version, [https://parts.igem.org/Part:BBa_K4882000 BBa BBa_K4882000]). When the fungi invade the insect body, Pmcl1(short) turns on, and they cumulate SuperNova protein. When the fungi grow out of the insect body and try to spread spores, the tissues are under sunlight and killed by ROS.  
  
 
===Characterization===
 
===Characterization===

Revision as of 13:43, 4 October 2023


SuperNova

SuperNova is a red fluorescent protein that produces reactive oxygen species (ROS) in the presence of green-yellow light (~579 nm) (Takemoto et al., 2013). Supernova is the monomeric version of KillerRed (BBa_K1184000) and should produce three times as much ROS as KillerRed can (Onukwufor et al., 2019).

Figure 1. The 3D structure of SuperNova (PDB ID: 3WCK; Takemoto et al., 2013).

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 151
    Illegal BsaI.rc site found at 442


Usage and Biology

Metarhizium anisopliae is an entomopathogenic fungus widely used as a biopesticide. To improve its safety, SuperNova is used as a part of a suicide switch for the engineered M. anisopliae. SuperNova is linked downstream of a hemolymph inducible promoter Pmcl1 (short version, BBa BBa_K4882000). When the fungi invade the insect body, Pmcl1(short) turns on, and they cumulate SuperNova protein. When the fungi grow out of the insect body and try to spread spores, the tissues are under sunlight and killed by ROS.

Characterization

2023 Hangzhou-SDG Team characterized this part as part of a suicide switch

SuperNova can be a part of the suicide switch for M. anisopliae when being connected after the hemolymph inducible promoter Pmcl1/Pmcl1(short).

Larvae of Galleria mellonella were killed by engineered M. anisopliae. The corpses were placed under sunshine for days until spores formed outside the insect body. Spores were collected by vertexing and the concentrations of spore suspensions were checked under a microscope.

Figure 2. The amount of spore formation by M. anisopliae containing SuperNova on G. mellonella corpses. **: p < 0.01; ***: p < 0.001; ****: p < 0.0001.

Results showed that suicide switches consisting of Supernova led to significantly fewer spores than WT did.

References

Onukwufor, J. O.; Trewin, A. J.; Baran, T. M.; Almast, A.; Foster, T. H.; Wojtovich, A. P. Quantification of Reactive Oxygen Species Production by the Red Fluorescent Proteins KillerRed, Supernova, and mCherry. Free Radical Biology and Medicine 2020, 147, 1–7. DOI:10.1016/j.freeradbiomed.2019.12.008.

Takemoto, K., Matsuda, T., Sakai, N. et al. SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation. Sci Rep 3, 2629 (2013). https://doi.org/10.1038/srep02629